Sequence Similarity Clusters for the Entities in PDB 1TJH

Entity #1 | Chains: L
anti-HIV-1 antibody 2F5 Light Chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 41 1173
95 % 3 41 1404 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 3 41 1428
70 % 746 2621 1
50 % 1536 5323 1
40 % 1797 6003 1
30 % 2192 7460 1
Entity #2 | Chains: H
anti-HIV-1 antibody 2F5 Heavy Chain protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 11521
95 % 3 41 1405 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.8
PDBFlex
90 % 3 41 1429
70 % 740 2580 2
50 % 1537 5323 1
40 % 1798 6003 1
30 % 2193 7460 1
Entity #3 | Chains: P
Envelope glycoprotein GP41 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3IDG 1 A 2F5 Fab light chain 9606
2 1TJG 1 L FAB 2F5 Light Chain 9606
3 1TJH 1 L anti-HIV-1 antibody 2F5 Light Chain 9606
4 3DRQ 1 A 2F5 Fab' light chain 9606
5 1TJI 1 L anti-HIV-1 antibody 2F5 Light Chain 9606
6 3D0V 1 A 2F5 Fab heavy chain 9606
7 3MOD 2 L ANTI-HIV-1 ANTIBODY 2F5 LIGHT CHAIN 9606
8 2F5B 1 L PROTEIN (ANTIBODY 2F5 (LIGHT CHAIN)) FAB' 9606
9 1U8I 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
10 3IDI 1 A 2F5 Fab light chain 9606
11 1U8H 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
12 2F5A 1 L PROTEIN (ANTIBODY 2F5 (LIGHT CHAIN)) FAB' 9606
13 3MOA 2 L ANTI-HIV-1 ANTIBODY 2F5 LIGHT CHAIN 9606
14 2PR4 1 L nmAb 2F5 Fab' Heavy Chain 9606
15 1U95 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
16 1U8K 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
17 3IDN 1 A 2F5 Fab light chain 9606
18 1U92 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
19 1U91 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
20 1U8Q 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
21 3IDJ 1 A 2F5 Fab light chain 9606
22 3IDM 1 A 2F5 Fab light chain 9606
23 1U8J 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
24 3D0L 1 A 2F5 heavy chain 9606
25 2P8L 1 A nmAb 2F5, light chain 9606
26 1U8M 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
27 3LEV 2 L 2F5 ANTIBODY LIGHT CHAIN 9606
28 3MOB 2 L ANTI-HIV-1 ANTIBODY 2F5 LIGHT CHAIN 9606
29 1U8N 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
30 1U93 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
31 2PW2 1 A 2F5 Fab' heavy chain 9606
32 2PW1 1 A 2F5 Fab fragment heavy chain 9606
33 1U8L 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
34 2P8M 1 A nmAb 2F5, light chain 9606
35 2P8P 1 A nmAb 2F5, light chain 9606
36 1U8O 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
37 3DRT 1 A 2F5 Fab' light chain 9606
38 1U8P 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606
39 3BQU 1 A 2F5 Fab' light chain 9606
40 3EGS 1 A 2F5 Fab' light chain 9606
41 3DRO 1 A 2F5 Fab light chain 9606