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Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 11mer epitope
Sequence Clustering and Redundancy Reduction Results
1TJH
Cluster # 8350 Members. Sequence cutoff: 100% Cluster size: 7 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1TJG 1 L FAB 2F5 Light Chain 9606  
2 1TJH 1 L anti-HIV-1 antibody 2F5 Light Chain 9606  
3 1TJI 1 L anti-HIV-1 antibody 2F5 Light Chain 9606  
4 3MOD 2 L ANTI-HIV-1 ANTIBODY 2F5 LIGHT CHAIN 9606  
5 3MOA 2 L ANTI-HIV-1 ANTIBODY 2F5 LIGHT CHAIN 9606  
6 3LEV 2 L 2F5 ANTIBODY LIGHT CHAIN 9606  
7 3MOB 2 L ANTI-HIV-1 ANTIBODY 2F5 LIGHT CHAIN 9606  
 
Sequence Clusters for the Sequence Entities in PDB 1TJH
Entity #1: Chains: L - anti-HIV-1 antibody 2F5 Light Chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 8350
95% 3 41 1030
90% 107 431 4
70% 396 1445 3
50% 976 3457 1
40% 977 3458 1
30% 1070 4083 1
Entity #2: Chains: H - anti-HIV-1 antibody 2F5 Heavy Chain protein, length: 237 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 16603
95% 3 41 1029
90% 3 41 1050
70% 475 1672 1
50% 977 3457 1
40% 978 3458 1
30% 1071 4083 1
Entity #3: Chains: P - Envelope glycoprotein GP41 protein, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.