Sequence Similarity Clusters for the Entities in PDB 1TJH

Entity #1 | Chains: L
anti-HIV-1 antibody 2F5 Light Chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 41 1221
95 % 3 41 1461 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 3 41 1486
70 % 765 2696 1
50 % 1574 5473 1
40 % 1839 6175 1
30 % 2237 7653 1
Entity #2 | Chains: H
anti-HIV-1 antibody 2F5 Heavy Chain protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 11822
95 % 3 41 1462 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.8
PDBFlex
90 % 3 41 1487
70 % 759 2655 2
50 % 1575 5473 1
40 % 1840 6175 1
30 % 2238 7653 1
Entity #3 | Chains: P
Envelope glycoprotein GP41 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures