Sequence Similarity Clusters for the Entities in PDB 1TJG

Entity #1 | Chains: L
FAB 2F5 Light Chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10921
95 % 2 41 1331 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 185 788 2
70 % 571 2474 1
50 % 1180 5011 1
40 % 1180 5011 1
30 % 1329 5941 1
Entity #2 | Chains: H
FAB 2F5 Heavy Chain protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 21462
95 % 2 41 1328
90 % 2 41 1353
70 % 571 2424 2
50 % 1181 5011 1
40 % 1181 5011 1
30 % 1330 5941 1
Entity #3 | Chains: P
Envelope glycoprotein GP41 protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures