Sequence Similarity Clusters for the Entities in PDB 1TJG

Entity #1 | Chains: L
FAB 2F5 Light Chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10652
95 % 2 41 1307 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 170 746 3
70 % 540 2392 1
50 % 1117 4843 1
40 % 1117 4843 1
30 % 1229 5705 1
Entity #2 | Chains: H
FAB 2F5 Heavy Chain protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 20978
95 % 2 41 1304
90 % 2 41 1331
70 % 540 2342 2
50 % 1118 4843 1
40 % 1118 4843 1
30 % 1230 5705 1
Entity #3 | Chains: P
Envelope glycoprotein GP41 protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures