Sequence Similarity Clusters for the Entities in PDB 1TJG

Entity #1 | Chains: L
FAB 2F5 Light Chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10393
95 % 2 41 1277 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.5
PDBFlex
90 % 151 701 3
70 % 511 2287 1
50 % 1058 4633 1
40 % 1058 4633 1
30 % 1164 5461 1
Entity #2 | Chains: H
FAB 2F5 Heavy Chain protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 20482
95 % 2 41 1274 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 2 41 1302
70 % 512 2244 2
50 % 1059 4633 1
40 % 1059 4633 1
30 % 1165 5461 1
Entity #3 | Chains: P
Envelope glycoprotein GP41 protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.