Sequence Similarity Clusters for the Entities in PDB 1T6V

Entity #1 | Chains: L,M
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 335 719 3
95 % 346 736 3 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 352 753 5
70 % 432 976 7
50 % 432 985 8
40 % 435 1020 10
30 % 435 1020 20
Entity #2 | Chains: N,O
novel antigen receptor protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28976
95 % 2 2 25320 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 2 2 24447
70 % 3 6 6701
50 % 5 17 2008
40 % 48 366 27
30 % 621 7321 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures