Sequence Similarity Clusters for the Entities in PDB 1T2K

Entity #1 | Chains: E
31-MER dna, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
31-MER dna, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
Interferon regulatory factor 3 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 5481
95 % 3 4 5805 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 3 4 5816
70 % 3 4 5672
50 % 3 4 5361
40 % 4 5 3981
30 % 6 9 2368
Entity #4 | Chains: C
Transcription factor AP-1 protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 7498
95 % 7 7 7058 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 7 7 7150
70 % 13 13 3171
50 % 13 13 3103
40 % 13 13 3010
30 % 13 13 2784
Entity #5 | Chains: D
Cyclic-AMP-dependent transcription factor ATF-2 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61965
95 % 1 1 50559
90 % 1 1 47922
70 % 1 1 41964
50 % 1 1 35596
40 % 1 1 31177
30 % 1 1 26015

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures