Sequence Similarity Clusters for the Entities in PDB 1T05

Entity #1 | Chains: T
oligonucleotide template dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
oligonucleotide primer dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
POL polyprotein protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 89 107 254
95 % 227 258 115 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.9
PDBFlex
90 % 227 258 119
70 % 227 258 135
50 % 228 259 163
40 % 229 260 173
30 % 229 260 192
Entity #4 | Chains: B
POL polyprotein protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 100 118 222
95 % 222 252 121 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 222 252 124
70 % 222 252 141
50 % 224 254 169
40 % 224 254 183
30 % 224 254 202

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1VRT 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
2 3QIP 1 A Reverse HIV-1 reverse transcriptase p66 p66 subunit (UNP residues 588-1147) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details 3.4.23.16 | Details
3 5D3G 1 A, C HIV-1 REVERSE TRANSCRIPTASE P66 subunit 11676 2.7.7.49 | Details
4 1RTH 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
5 3DLG 1 A REVERSE TRANSCRIPTASE/RIBONUCLEASE H GAG-POL POLYPROTEIN P66 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
6 1VRU 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
7 2RKI 1 A HIV-1 reverse transcriptase (RT) p66 11676 2.7.7.49 | Details
8 1S1T 1 A Reverse transcriptase P66 11676 2.7.7.49 | Details
9 5J2M 1 A HIV-1 reverse transcriptase p51 subunit unp residues 1-560 11676 2.7.7 | Details
10 5K14 1 A HIV-1 reverse transcriptase(isolate HXB2) 11676
11 1C1B 1 A HIV-1 REVERSE TRANSCRIPTASE (A-CHAIN) P66 11676 2.7.7.49 | Details
12 3LAK 1 A, B HIV Reverse transcriptase 11676 2.7.7.49 | Details
13 3MEC 1 A p66 Reverse transcriptase 11676 2.7.7.49 | Details
14 1RTJ 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
15 5J2P 1 A reverse transcriptase, p66 domain 11676 2.7.7 | Details
16 1RT1 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
17 3MEE 1 A p66 Reverse transcriptase 11676 2.7.7.49 | Details
18 3DLE 1 A Reverse transcriptase/ribonuclease H GAG-POL POLYPROTEIN P66 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
19 1RT2 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
20 4I7F 1 A Reverse transcriptase p66 11676 2.7.7.49 | Details
21 3LAL 1 A, B HIV Reverse transcriptase 11676 2.7.7.49 | Details
22 1TKT 1 A Pol polyproteins [Reverse transcriptase], Chain A P66 11676 2.7.7.49 | Details
23 2BE2 1 A REVERSE TRANSCRIPTASE P66 SUBUNIT residues 599-1158 11676 2.7.7.49 | Details
24 3ISN 1 C Reverse transcriptase/ribonuclease H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
25 3DOL 1 A Reverse transcriptase/ribonuclease H GAG-POL POLYPROTEIN P66 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
26 3MED 1 A p66 Reverse transcriptase 11676 2.7.7.49 | Details
27 1C1C 1 A HIV-1 REVERSE TRANSCRIPTASE (A-CHAIN) P66 11676 2.7.7.49 | Details
28 1C0U 1 A HIV-1 REVERSE TRANSCRIPTASE (A-CHAIN) P66 11676 2.7.7.49 | Details
29 1LWC 1 A HIV-1 REVERSE TRANSCRIPTASE p66 11676 2.7.7.49 | Details
30 1S1V 1 A Reverse transcriptase P66 11676 2.7.7.49 | Details
31 3KK1 1 A Reverse transcriptase p66 subunit 11676 2.7.7.49 | Details
32 1C0T 1 A HIV-1 REVERSE TRANSCRIPTASE (A-CHAIN) P66 11676 2.7.7.49 | Details
33 1REV 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
34 1EP4 1 A HIV-1 REVERSE TRANSCRIPTASE P66 11676 2.7.7.49 | Details
35 3LAN 1 A, B HIV Reverse transcriptase 11676 2.7.7.49 | Details
36 2B6A 1 A Reverse transcriptase p66 subunit RESIDUES 599-1158 11676 2.7.7.49 | Details
37 1TL3 1 A Pol polyprotein, Reverse transcriptase, Chain A P66 11676 2.7.7.49 | Details
38 1TKZ 1 A Pol polyprotein, Reverse transcriptase, Chain A P66 11676 2.7.7.49 | Details
39 1IKX 1 A POL POLYPROTEIN 11676 2.7.7.49 | Details
40 5J2Q 1 A HIV-1 reverse transcriptase p66 subunit 11676 2.7.7 | Details
41 1DTT 1 A HIV-1 RT A-CHAIN P66 11676
42 1DTQ 1 A HIV-1 RT A-CHAIN P66 11676
43 3KK2 1 A Reverse transcriptase p66 subunit 11676 2.7.7.49 | Details
44 3ITH 1 A, C Reverse transcriptase/ribonuclease H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
45 1KLM 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
46 1TKX 1 A Pol polyprotein, Reverse transcriptase, Chain A P66 11676 2.7.7.49 | Details
47 5J2N 1 A reverse transcriptase, p66 domain 11676 2.7.7 | Details
48 1S9E 1 A POL polyprotein [Contains:Reverse transcriptase] P66 SUBUNIT 11676 2.7.7.49 | Details
49 5HLF 1 A, C HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT 11676 2.7.7.49 | Details
50 3LAM 1 A, B HIV Reverse transcriptase 11676 2.7.7.49 | Details
51 1S1X 1 A Reverse transcriptase P66 11676 2.7.7.49 | Details
52 5HRO 1 A, C HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT 11676 2.7.7.49 | Details
53 3DOK 1 A Reverse transcriptase/ribonuclease H GAG-POL POLYPROTEIN P66 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
54 3MEG 1 A p66 Reverse transcriptase 11676 2.7.7.49 | Details
55 1TL1 1 A Pol polyprotein, Reverse transcriptase, Chain A P66 11676 2.7.7.49 | Details
56 1HQU 1 A POL POLYPROTEIN P66 SUBUNIT 11676 2.7.7.49 | Details
57 1DLO 1 A HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
58 1RT6 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
59 1HQE 1 A POL POLYPROTEIN P66 SUBUNIT 11676 2.7.7.49 | Details
60 1IKY 1 A POL POLYPROTEIN 11676 2.7.7.49 | Details
61 3KK3 1 A Reverse transcriptase p66 subunit 11676 2.7.7.49 | Details
62 1R0A 3 A Reverse transcriptase p66 HIV-1 RT 11676 2.7.7.49 | Details
63 1IKW 1 A POL POLYPROTEIN 11676 2.7.7.49 | Details
64 1S9G 1 A POL polyprotein [Contains: Reverse transcriptase] P66 SUBUNIT 11676 2.7.7.49 | Details
65 1S1U 1 A Reverse transcriptase P66 11676 2.7.7.49 | Details
66 1JLQ 1 A HIV-1 RT, A-CHAIN P66 11676 2.7.7.49 | Details
67 1RT5 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
68 5I3U 1 A, C HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT 11676 2.7.7.49 | Details
69 1RT4 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
70 1IKV 1 A POL POLYPROTEIN 11676 2.7.7.49 | Details
71 2WON 1 A HIV-1 REVERSE TRANSCRIPTASE P66, RESIDUES 588-1147 11676 2.7.7.49 | Details
72 1HNI 1 A HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) 11676 2.7.7.49 | Details
73 3DM2 1 A Reverse transcriptase/ribonuclease H GAG-POL POLYPROTEIN P66 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
74 1S6P 1 A POL polyprotein [Contains: Reverse transcriptase] P66 SUBUNIT 11676 2.7.7.49 | Details
75 5HP1 1 A, C HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT 11676 2.7.7.49 | Details
76 1RTI 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
77 2B5J 1 A Reverse transcriptase P66 SUBUNIT RESIDUES 599-1158 11676 2.7.7.49 | Details
78 1TV6 1 A reverse transcriptase p66 subunit 11676 2.7.7.4 | Details
79 1SV5 1 A Reverse Transcriptase P66 SUBUNIT 11676 2.7.7.49 | Details
80 2BAN 1 A Reverse transcriptase P66 subunit RESIDUES 599-1158 11676 2.7.7.49 | Details
81 1S6Q 1 A POL polyprotein [Contains: Reverse transcriptase] P66 SUBUNIT 11676 2.7.7.49 | Details
82 1N6Q 3 A Reverse Transcriptase p66 11676 2.7.7.49 | Details
83 2HMI 3 A SUBUNIT OF V-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
84 1HNV 1 A HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) 11676 2.7.7.49 | Details
85 2WOM 1 A HIV-1 REVERSE TRANSCRIPTASE P66, RESIDUES 588-1147 11676 2.7.7.49 | Details
86 2I5J 1 A Reverse transcriptase/ribonuclease H P66 subunit residues 599-1150 11676 2.7.7.49 | Details
87 3JSM 3 A HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT 11676 2.7.7.49 | Details
88 5I42 1 A, C HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT 11676 2.7.7.49 | Details
89 1T05 3 A POL polyprotein HIV-1 reverse transcriptase p66 subunit 11676 2.7.7.49 | Details
90 3KJV 1 A Reverse transcriptase p66 subunit 11676 2.7.7.49 | Details
91 1HPZ 1 A POL POLYPROTEIN P66 SUBUNIT 11676 2.7.7.49 | Details
92 3HVT 1 A HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) 11676 2.7.7.49 | Details
93 1RT7 1 A HIV-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
94 1TVR 1 A REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
95 1SUQ 1 A REVERSE TRANSCRIPTASE P66 SUBUNIT 11676 2.7.7.49 | Details
96 1N5Y 3 A REVERSE TRANSCRIPTASE p66 11676 2.7.7.49 | Details
97 1T03 3 A POL polyprotein Reverse transcriptase, p66 subunit 11676 2.7.7.49 | Details
98 1BQM 1 A REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
99 1HYS 3 A HIV-1 REVERSE TRANSCRIPTASE P66 11676 2.7.7.49 | Details
100 1HMV 1 A, C, E, G HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) 11676 2.7.7.49 | Details
101 1BQN 1 A REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
102 3JYT 1 A HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT 11676 2.7.7.49 | Details
103 4B3O 1 A REVERSE TRANSCRIPTASE/RIBONUCLEASE H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
104 1J5O 3 A Reverse transcriptase 11676 2.7.7.49 | Details
105 1QE1 1 A REVERSE TRANSCRIPTASE, SUBUNIT P66 SUBUNIT A (P66), RESIDUES 168-725 11676 2.7.7.49 | Details
106 4B3P 1 A REVERSE TRANSCRIPTASE/RIBONUCLEASE H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
107 4B3Q 1 A REVERSE TRANSCRIPTASE/RIBONUCLEASE H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details