Sequence Similarity Clusters for the Entities in PDB 1T05

Entity #1 | Chains: T
oligonucleotide template dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
oligonucleotide primer dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
POL polyprotein protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6860
95 % 218 248 88 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 4.0
PDBFlex
90 % 218 248 93
70 % 218 248 111
50 % 219 249 147
40 % 219 249 162
30 % 219 249 179
Entity #4 | Chains: B
POL polyprotein protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6901
95 % 213 242 112 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.6
PDBFlex
90 % 213 242 116
70 % 213 242 131
50 % 214 243 154
40 % 214 243 172
30 % 214 243 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1R0A 3 A Reverse transcriptase p66 HIV-1 RT 11676 2.7.7.49 | Details
2 1N6Q 3 A Reverse Transcriptase p66 11676 2.7.7.49 | Details
3 1T05 3 A POL polyprotein HIV-1 reverse transcriptase p66 subunit 11676 2.7.7.49 | Details
4 1N5Y 3 A REVERSE TRANSCRIPTASE p66 11676 2.7.7.49 | Details
5 1T03 3 A POL polyprotein Reverse transcriptase, p66 subunit 11676 2.7.7.49 | Details
6 3KLF 1 A, E, I, M Reverse transcriptase/ribonuclease H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details