Sequence Similarity Clusters for the Entities in PDB 1T05

Entity #1 | Chains: T
oligonucleotide template dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
oligonucleotide primer dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
POL polyprotein protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6960
95 % 218 248 94 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 218 248 99
70 % 218 248 117
50 % 219 249 151
40 % 219 249 166
30 % 219 249 180
Entity #4 | Chains: B
POL polyprotein protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 7001
95 % 213 242 118 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 213 242 123
70 % 213 242 139
50 % 214 243 158
40 % 214 243 175
30 % 214 243 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1R0A 3 A Reverse transcriptase p66 HIV-1 RT 11676 2.7.7.49 | Details
2 1N6Q 3 A Reverse Transcriptase p66 11676 2.7.7.49 | Details
3 1T05 3 A POL polyprotein HIV-1 reverse transcriptase p66 subunit 11676 2.7.7.49 | Details
4 1N5Y 3 A REVERSE TRANSCRIPTASE p66 11676 2.7.7.49 | Details
5 1T03 3 A POL polyprotein Reverse transcriptase, p66 subunit 11676 2.7.7.49 | Details
6 3KLF 1 A, E, I, M Reverse transcriptase/ribonuclease H 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details