Sequence Similarity Clusters for the Entities in PDB 1T05

Entity #1 | Chains: T
oligonucleotide template dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
oligonucleotide primer dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
POL polyprotein protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 89 107 260
95 % 246 277 88 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.9
PDBFlex
90 % 246 277 91
70 % 246 277 107
50 % 247 278 144
40 % 248 279 156
30 % 248 279 173
Entity #4 | Chains: B
POL polyprotein protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 112 130 207
95 % 241 271 109 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 241 271 114
70 % 241 271 126
50 % 243 273 152
40 % 243 273 166
30 % 243 273 182

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures