Sequence Similarity Clusters for the Entities in PDB 1T05

Entity #1 | Chains: T
oligonucleotide template dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
oligonucleotide primer dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
POL polyprotein protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 6372
95 % 200 230 106
90 % 200 230 110
70 % 200 230 127
50 % 201 231 154
40 % 201 231 172
30 % 201 231 187
Entity #4 | Chains: B
POL polyprotein protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 6412
95 % 195 224 116
90 % 195 224 120
70 % 195 224 137
50 % 196 225 164
40 % 196 225 179
30 % 196 225 196

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.