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HIV-1 reverse transcriptase crosslinked to template-primer with tenofovir-diphosphate bound as the incoming nucleotide substrate
Sequence Clustering and Redundancy Reduction Results
1T05
Sequence Clusters for the Sequence Entities in PDB 1T05
Entity #1: Chains: T - oligonucleotide template dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: P - oligonucleotide primer dna, length: 21 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - POL polyprotein protein, length: 558 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 4905
95% 172 200 60
90% 172 200 63
70% 172 200 77
50% 173 201 114
40% 173 201 138
30% 173 201 159
Entity #4: Chains: B - POL polyprotein protein, length: 437 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 5 10604
95% 167 194 68
90% 167 194 72
70% 167 194 86
50% 168 195 117
40% 168 195 147
30% 168 195 171
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.