Sequence Similarity Clusters for the Entities in PDB 1SVC

Entity #1 | Chains: D
DNA (5'-D(*AP*GP*AP*TP*GP*GP*GP*GP*AP*AP*TP*CP*CP*CP*CP*TP*A P*GP*A)-3') dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
PROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB)) protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55816
95 % 1 1 40420
90 % 1 1 38571
70 % 1 1 34236
50 % 1 1 29243
40 % 1 1 25849
30 % 1 1 21998

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures