Sequence Similarity Clusters for the Entities in PDB 1SVC

Entity #1 | Chains: D
DNA (5'-D(*AP*GP*AP*TP*GP*GP*GP*GP*AP*AP*TP*CP*CP*CP*CP*TP*A P*GP*A)-3') dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
PROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB)) protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53402
95 % 1 1 44031
90 % 1 1 41874
70 % 1 1 36894
50 % 1 1 35004
40 % 1 1 34097
30 % 1 1 28509

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures