Sequence Similarity Clusters for the Entities in PDB 1SVC

Entity #1 | Chains: D
DNA (5'-D(*AP*GP*AP*TP*GP*GP*GP*GP*AP*AP*TP*CP*CP*CP*CP*TP*A P*GP*A)-3') dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
PROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB)) protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48361
95 % 1 1 35082
90 % 1 1 33613
70 % 1 1 30055
50 % 1 1 25814
40 % 1 1 22848
30 % 1 1 19442

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.