Sequence Similarity Clusters for the Entities in PDB 1SVA

Entity #1 | Chains: 1,2,3,4,5,6
SIMIAN VIRUS 40 protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 12129
95 % 1 1 11861 Flexibility: Medium
Max RMSD: 7.7, Avg RMSD: 5.4
PDBFlex
90 % 1 1 11701
70 % 1 2 5560
50 % 1 5 1992
40 % 1 5 1998
30 % 1 5 1921

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures