Sequence Similarity Clusters for the Entities in PDB 1SVA

Entity #1 | Chains: 1,2,3,4,5,6
SIMIAN VIRUS 40 protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 14843
95 % 1 1 13882 Flexibility: Medium
Max RMSD: 7.7, Avg RMSD: 5.4
PDBFlex
90 % 1 1 13948
70 % 1 3 3816
50 % 1 6 1665
40 % 1 6 1656
30 % 1 6 1638

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures