Sequence Similarity Clusters for the Entities in PDB 1SQ2

Entity #1 | Chains: L
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 146 651 3
95 % 147 704 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 150 721 5
70 % 161 938 7
50 % 161 946 8
40 % 162 980 11
30 % 162 980 19
Entity #2 | Chains: N
novel antigen receptor protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29079
95 % 1 2 24132 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 2 23349
70 % 2 6 6255
50 % 2 17 1874
40 % 46 916 5
30 % 54 1042 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.