Sequence Similarity Clusters for the Entities in PDB 1SQ2

Entity #1 | Chains: L
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 148 668 3
95 % 149 721 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 152 738 5
70 % 166 961 7
50 % 166 969 8
40 % 167 1003 11
30 % 167 1003 20
Entity #2 | Chains: N
novel antigen receptor protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 30363
95 % 1 2 25145 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 2 24298
70 % 2 6 6528
50 % 2 17 1983
40 % 48 956 5
30 % 57 1085 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures