Sequence Similarity Clusters for the Entities in PDB 1SQ2

Entity #1 | Chains: L
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 143 640 3
95 % 144 693 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 147 710 5
70 % 158 927 7
50 % 158 935 7
40 % 159 969 11
30 % 159 969 19
Entity #2 | Chains: N
novel antigen receptor protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 28209
95 % 1 2 23396
90 % 1 2 22654
70 % 2 6 6051
50 % 2 17 1819
40 % 44 866 5
30 % 52 992 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.