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HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target site
Sequence Clustering and Redundancy Reduction Results
1SKM
Sequence Clusters for the Sequence Entities in PDB 1SKM
Entity #1: Chains: C - 5'-D(*TP*CP*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3' dna, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: D - 5'-D(*T*GP*TP*CP*AP*GP*(HCX)P*GP*CP*AP*TP*GP*G)-3' dna, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - Modification methylase HhaI protein, length: 327 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 18 1877
95% 8 29 1266
90% 8 29 1295
70% 8 29 1324
50% 8 29 1399
40% 8 29 1442
30% 8 31 1191
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.