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HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target site
Sequence Clustering and Redundancy Reduction Results
1SKM
Sequence Clusters for the Sequence Entities in PDB 1SKM
Entity #1: Chains: C - 5'-D(*TP*CP*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3' dna, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: D - 5'-D(*T*GP*TP*CP*AP*GP*(HCX)P*GP*CP*AP*TP*GP*G)-3' dna, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - Modification methylase HhaI protein, length: 327 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 18 1886
95% 8 29 1270
90% 8 29 1300
70% 8 29 1328
50% 8 29 1405
40% 8 29 1448
30% 8 31 1196
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.