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RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX
Sequence Clustering and Redundancy Reduction Results
1SFO
Sequence Clusters for the Sequence Entities in PDB 1SFO
Entity #1: Chains: R - RNA STRAND rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 107 178
95% 92 107 253
90% 92 107 265
70% 93 108 270
50% 98 116 274
40% 98 116 302
30% 98 116 317
Entity #11: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 103 197
95% 88 103 278
90% 88 103 292
70% 88 103 309
50% 88 103 350
40% 89 104 363
30% 89 104 371
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 106 185
95% 92 106 261
90% 92 106 275
70% 92 106 292
50% 92 106 325
40% 92 106 349
30% 92 106 357
Entity #2: Chains: T - DNA STRAND dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 101 202
95% 88 101 285
90% 88 101 299
70% 88 101 315
50% 89 102 345
40% 89 102 369
30% 89 102 376
Entity #4: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 102 199
95% 88 103 274
90% 88 103 287
70% 88 103 306
50% 89 104 337
40% 94 112 313
30% 94 112 322
Entity #5: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 101 203
95% 88 101 287
90% 88 101 301
70% 88 101 317
50% 89 102 347
40% 89 102 372
30% 89 102 380
Entity #6: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 108 167
95% 93 108 239
90% 93 108 251
70% 93 108 274
50% 94 109 302
40% 94 109 325
30% 94 109 342
Entity #7: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 105 190
95% 92 105 269
90% 92 105 281
70% 92 105 297
50% 93 107 312
40% 93 107 339
30% 93 107 348
Entity #8: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 107 172
95% 92 108 240
90% 92 108 253
70% 92 108 275
50% 92 108 313
40% 92 108 340
30% 93 110 341
Entity #9: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 102 201
95% 87 102 284
90% 87 102 298
70% 87 102 314
50% 88 103 343
40% 88 103 367
30% 88 103 374
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.