Sequence Similarity Clusters for the Entities in PDB 1SFO

Entity #1 | Chains: R
RNA STRAND rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 142 173
95 % 103 142 234
90 % 103 142 248
70 % 106 159 250
50 % 111 167 246
40 % 111 167 264
30 % 111 167 270
Entity #11 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 117 222
95 % 98 117 314
90 % 98 117 331
70 % 98 117 368
50 % 100 122 414
40 % 101 124 433
30 % 101 124 433
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 138 181
95 % 101 138 242
90 % 101 138 257
70 % 101 138 287
50 % 103 143 311
40 % 103 143 325
30 % 103 143 335
Entity #2 | Chains: T
DNA STRAND dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 115 226
95 % 98 115 320
90 % 98 115 337
70 % 100 120 354
50 % 101 132 367
40 % 101 132 392
30 % 101 132 396
Entity #4 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 116 224
95 % 98 117 311
90 % 98 117 327
70 % 101 124 338
50 % 101 134 356
40 % 106 142 322
30 % 106 145 330
Entity #5 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 112 231
95 % 96 112 325
90 % 96 112 344
70 % 96 112 377
50 % 97 114 438
40 % 97 114 469
30 % 97 114 470
Entity #6 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 143 170
95 % 104 143 231
90 % 104 143 246
70 % 106 148 270
50 % 107 150 290
40 % 107 160 284
30 % 107 160 293
Entity #7 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 137 183
95 % 101 137 245
90 % 101 137 260
70 % 101 137 292
50 % 104 155 279
40 % 104 155 297
30 % 104 155 307
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 142 172
95 % 103 143 232
90 % 103 143 247
70 % 103 143 278
50 % 105 148 295
40 % 105 148 309
30 % 106 161 292
Entity #9 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 116 225
95 % 97 116 319
90 % 97 116 336
70 % 99 121 353
50 % 100 123 405
40 % 100 123 435
30 % 100 126 423

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.