Sequence Similarity Clusters for the Entities in PDB 1SFO

Entity #1 | Chains: R
RNA STRAND rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 127 174
95 % 102 127 240
90 % 102 127 248
70 % 103 137 265
50 % 108 145 260
40 % 108 145 279
30 % 108 145 291
Entity #11 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 116 204
95 % 97 116 291
90 % 97 116 303
70 % 97 116 330
50 % 97 116 369
40 % 98 117 390
30 % 98 117 391
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 123 181
95 % 100 123 253
90 % 100 123 261
70 % 100 123 297
50 % 100 123 325
40 % 100 123 348
30 % 100 123 355
Entity #2 | Chains: T
DNA STRAND dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 114 209
95 % 97 114 295
90 % 97 114 308
70 % 97 114 336
50 % 98 124 331
40 % 98 124 359
30 % 98 124 366
Entity #4 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 115 205
95 % 97 116 286
90 % 97 116 297
70 % 97 116 326
50 % 98 126 328
40 % 103 134 315
30 % 103 137 320
Entity #5 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 111 211
95 % 95 111 303
90 % 95 111 317
70 % 95 111 343
50 % 96 112 388
40 % 96 112 427
30 % 96 112 419
Entity #6 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 128 172
95 % 103 128 236
90 % 103 128 246
70 % 103 128 278
50 % 104 129 308
40 % 104 138 306
30 % 104 138 318
Entity #7 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 122 184
95 % 100 122 256
90 % 100 122 262
70 % 100 122 300
50 % 101 133 300
40 % 101 133 321
30 % 101 133 332
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 127 173
95 % 102 128 237
90 % 102 128 247
70 % 102 128 279
50 % 102 128 314
40 % 102 128 335
30 % 103 139 314
Entity #9 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 115 207
95 % 96 115 294
90 % 96 115 307
70 % 96 115 335
50 % 97 116 364
40 % 97 116 398
30 % 97 119 384

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.