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An Information Portal to 110790 Biological Macromolecular Structures

RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX
Sequence Clustering and Redundancy Reduction Results
1SFO
Sequence Clusters for the Sequence Entities in PDB 1SFO
Entity #1: Chains: R - RNA STRAND rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 109 189
95% 94 109 263
90% 94 109 276
70% 95 110 290
50% 100 118 274
40% 100 118 310
30% 100 118 320
Entity #11: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 105 201
95% 90 105 286
90% 90 105 296
70% 90 105 319
50% 90 105 350
40% 91 106 368
30% 91 106 374
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 108 191
95% 94 108 266
90% 94 108 280
70% 94 108 300
50% 94 108 328
40% 94 108 362
30% 94 108 365
Entity #2: Chains: T - DNA STRAND dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 103 205
95% 90 103 288
90% 90 103 301
70% 90 103 323
50% 91 104 347
40% 91 104 378
30% 91 104 381
Entity #4: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 104 202
95% 90 105 284
90% 90 105 295
70% 90 105 318
50% 91 106 334
40% 96 114 320
30% 96 114 329
Entity #5: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 103 206
95% 90 103 289
90% 90 103 302
70% 90 103 324
50% 91 104 349
40% 91 104 380
30% 91 104 384
Entity #6: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 110 184
95% 95 110 256
90% 95 110 268
70% 95 110 292
50% 96 111 310
40% 96 111 344
30% 96 111 353
Entity #7: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 107 192
95% 94 107 272
90% 94 107 285
70% 94 107 305
50% 95 109 317
40% 95 109 349
30% 95 109 358
Entity #8: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 109 188
95% 94 110 257
90% 94 110 269
70% 94 110 293
50% 94 110 318
40% 94 110 350
30% 95 112 350
Entity #9: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 104 204
95% 89 104 287
90% 89 104 300
70% 89 104 322
50% 90 105 343
40% 90 105 375
30% 90 105 379
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.