Sequence Similarity Clusters for the Entities in PDB 1SFO

Entity #1 | Chains: R
RNA STRAND rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 137 178
95 % 103 137 234
90 % 103 137 247
70 % 104 148 262
50 % 109 156 255
40 % 109 156 275
30 % 109 156 280
Entity #11 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 117 216
95 % 98 117 300
90 % 98 117 317
70 % 98 117 354
50 % 98 117 415
40 % 99 119 435
30 % 99 119 436
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 133 180
95 % 101 133 242
90 % 101 133 254
70 % 101 133 287
50 % 101 133 323
40 % 101 133 343
30 % 101 133 347
Entity #2 | Chains: T
DNA STRAND dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 115 221
95 % 98 115 308
90 % 98 115 325
70 % 98 115 364
50 % 99 126 371
40 % 99 126 402
30 % 99 126 402
Entity #4 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 116 219
95 % 98 117 297
90 % 98 117 313
70 % 98 117 351
50 % 99 128 361
40 % 104 136 327
30 % 104 139 330
Entity #5 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 112 225
95 % 96 112 313
90 % 96 112 332
70 % 96 112 369
50 % 97 114 419
40 % 97 114 455
30 % 97 114 451
Entity #6 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 138 174
95 % 104 138 231
90 % 104 138 243
70 % 104 138 277
50 % 105 140 304
40 % 105 149 299
30 % 105 149 312
Entity #7 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 132 182
95 % 101 132 246
90 % 101 132 257
70 % 101 132 289
50 % 102 144 296
40 % 102 144 312
30 % 102 144 324
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 137 177
95 % 103 138 232
90 % 103 138 244
70 % 103 138 279
50 % 103 138 312
40 % 103 138 326
30 % 104 150 309
Entity #9 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 116 220
95 % 97 116 307
90 % 97 116 324
70 % 97 116 362
50 % 98 118 407
40 % 98 118 438
30 % 98 121 428

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.