Sequence Similarity Clusters for the Entities in PDB 1SFO

Entity #1 | Chains: R
RNA STRAND rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 131 172
95 % 102 131 236
90 % 102 131 246
70 % 103 141 263
50 % 108 149 257
40 % 108 149 279
30 % 108 149 288
Entity #11 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 116 207
95 % 97 116 294
90 % 97 116 307
70 % 97 116 338
50 % 97 116 397
40 % 98 117 419
30 % 98 117 420
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 127 178
95 % 100 127 246
90 % 100 127 254
70 % 100 127 285
50 % 100 127 321
40 % 100 127 346
30 % 100 127 354
Entity #2 | Chains: T
DNA STRAND dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 114 211
95 % 97 114 299
90 % 97 114 313
70 % 97 114 344
50 % 98 124 346
40 % 98 124 378
30 % 98 124 380
Entity #4 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 115 208
95 % 97 116 288
90 % 97 116 300
70 % 97 116 334
50 % 98 126 336
40 % 103 134 322
30 % 103 137 327
Entity #5 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 111 213
95 % 95 111 307
90 % 95 111 322
70 % 95 111 358
50 % 96 112 411
40 % 96 112 447
30 % 96 112 441
Entity #6 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 132 169
95 % 103 132 231
90 % 103 132 242
70 % 103 132 277
50 % 104 133 303
40 % 104 142 302
30 % 104 142 313
Entity #7 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 126 179
95 % 100 126 248
90 % 100 126 256
70 % 100 126 288
50 % 101 137 298
40 % 101 137 316
30 % 101 137 330
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 131 171
95 % 102 132 234
90 % 102 132 245
70 % 102 132 278
50 % 102 132 308
40 % 102 132 332
30 % 103 143 311
Entity #9 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 115 209
95 % 96 115 298
90 % 96 115 311
70 % 96 115 343
50 % 97 116 394
40 % 97 116 427
30 % 97 119 415

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.