Sequence Similarity Clusters for the Entities in PDB 1SDL

Entity #1 | Chains: A,C
HEMOGLOBIN A protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 254 12
95 % 35 265 16 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 35 265 17
70 % 43 332 17
50 % 108 754 4
40 % 109 759 7
30 % 339 1294 6
Entity #2 | Chains: B,D
HEMOGLOBIN A protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 214 43
95 % 33 250 20 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 34 255 21
70 % 43 346 14
50 % 109 754 4
40 % 110 759 7
30 % 340 1294 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures