Sequence Similarity Clusters for the Entities in PDB 1SDD

Entity #1 | Chains: A
Coagulation factor V protein, length: 306 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54159
95 % 1 1 44622
90 % 1 1 42420
70 % 1 1 37338
50 % 1 1 31718
40 % 1 1 27771
30 % 1 1 23166
Entity #2 | Chains: B
Coagulation factor V protein, length: 647 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54158
95 % 1 1 44621
90 % 1 1 42419
70 % 1 1 37337
50 % 1 1 31717
40 % 1 5 11769
30 % 1 5 9987

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1SDD 2 B Coagulation factor V Light Chain (A3, C1, C2 domains, residues 1565-2211) 9913