Sequence Similarity Clusters for the Entities in PDB 1SDD

Entity #1 | Chains: A
Coagulation factor V protein, length: 306 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54234
95 % 1 1 44679
90 % 1 1 42476
70 % 1 1 37389
50 % 1 1 31763
40 % 1 1 27813
30 % 1 1 23195
Entity #2 | Chains: B
Coagulation factor V protein, length: 647 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54233
95 % 1 1 44678
90 % 1 1 42475
70 % 1 1 37388
50 % 1 1 31762
40 % 1 5 11789
30 % 1 5 9999

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1SDD 1 A Coagulation factor V A1 Domain (residues 29-305) 9913