Sequence Similarity Clusters for the Entities in PDB 1SDD

Entity #1 | Chains: A
Coagulation factor V protein, length: 306 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51088
95 % 1 1 42194
90 % 1 1 40187
70 % 1 1 35523
50 % 1 1 30178
40 % 1 1 26440
30 % 1 1 22070
Entity #2 | Chains: B
Coagulation factor V protein, length: 647 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51087
95 % 1 1 42193
90 % 1 1 40186
70 % 1 1 35522
50 % 1 1 30177
40 % 1 5 11149
30 % 1 5 9483

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures