Sequence Similarity Clusters for the Entities in PDB 1SDD

Entity #1 | Chains: A
Coagulation factor V protein, length: 306 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57138
95 % 1 1 40908
90 % 1 1 39053
70 % 1 1 34647
50 % 1 1 29574
40 % 1 1 26099
30 % 1 1 22170
Entity #2 | Chains: B
Coagulation factor V protein, length: 647 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51541
95 % 1 1 38288
90 % 1 1 36547
70 % 1 1 32524
50 % 1 1 27857
40 % 1 5 10418
30 % 1 5 9093

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures