Sequence Similarity Clusters for the Entities in PDB 1SDD

Entity #1 | Chains: A
Coagulation factor V protein, length: 306 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53906
95 % 1 1 44412
90 % 1 1 42237
70 % 1 1 37201
50 % 1 1 31602
40 % 1 1 27673
30 % 1 1 23094
Entity #2 | Chains: B
Coagulation factor V protein, length: 647 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53905
95 % 1 1 44411
90 % 1 1 42236
70 % 1 1 37200
50 % 1 1 31601
40 % 1 5 11725
30 % 1 5 9956

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures