Sequence Similarity Clusters for the Entities in PDB 1SDD

Entity #1 | Chains: A
Coagulation factor V protein, length: 306 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53125
95 % 1 1 43825
90 % 1 1 41686
70 % 1 1 36743
50 % 1 1 31221
40 % 1 1 27335
30 % 1 1 22840
Entity #2 | Chains: B
Coagulation factor V protein, length: 647 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53124
95 % 1 1 43824
90 % 1 1 41685
70 % 1 1 36742
50 % 1 1 31220
40 % 1 5 11564
30 % 1 5 9818

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures