Sequence Similarity Clusters for the Entities in PDB 1SDD

Entity #1 | Chains: A
Coagulation factor V protein, length: 306 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51985
95 % 1 1 42874
90 % 1 1 40806
70 % 1 1 36023
50 % 1 1 30582
40 % 1 1 26760
30 % 1 1 22353
Entity #2 | Chains: B
Coagulation factor V protein, length: 647 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51984
95 % 1 1 42873
90 % 1 1 40805
70 % 1 1 36022
50 % 1 1 30581
40 % 1 5 11321
30 % 1 5 9613

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures