Sequence Similarity Clusters for the Entities in PDB 1SD3

Entity #1 | Chains: A,B
Glutamate receptor, ionotropic kainate 2 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 15 1742
95 % 20 30 705 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.7
PDBFlex
90 % 20 31 649
70 % 47 86 235
50 % 147 276 31
40 % 147 277 44
30 % 184 358 49

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures