Sequence Similarity Clusters for the Entities in PDB 1S9E

Entity #1 | Chains: A
POL polyprotein [Contains:Reverse transcriptase] protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 107 261
95 % 163 277 88 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.9
PDBFlex
90 % 163 277 92
70 % 163 277 107
50 % 164 278 144
40 % 164 279 156
30 % 164 279 173
Entity #2 | Chains: B
POL polyprotein [Contains: Reverse transcriptase] protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 130 207
95 % 159 271 109 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 159 271 115
70 % 159 271 126
50 % 160 273 152
40 % 160 273 167
30 % 160 273 182

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures