Sequence Similarity Clusters for the Entities in PDB 1S9E

Entity #1 | Chains: A
POL polyprotein [Contains:Reverse transcriptase] protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 19 1865
95 % 114 218 107
90 % 114 218 112
70 % 114 218 126
50 % 115 219 152
40 % 115 219 167
30 % 115 219 185
Entity #2 | Chains: B
POL polyprotein [Contains: Reverse transcriptase] protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 80 232
95 % 110 212 113
90 % 110 212 117
70 % 110 212 135
50 % 111 213 164
40 % 111 213 175
30 % 111 213 191

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.