Sequence Similarity Clusters for the Entities in PDB 1S9E

Entity #1 | Chains: A
POL polyprotein [Contains:Reverse transcriptase] protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 26 1190
95 % 136 248 94 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 136 248 99
70 % 136 248 117
50 % 137 249 151
40 % 137 249 166
30 % 137 249 180
Entity #2 | Chains: B
POL polyprotein [Contains: Reverse transcriptase] protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 50 105 204
95 % 132 242 118 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 132 242 123
70 % 132 242 139
50 % 133 243 158
40 % 133 243 175
30 % 133 243 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures