Sequence Similarity Clusters for the Entities in PDB 1S72

Entity #1 | Chains: 0
23S ribosomal RNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L10e protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 692
95 % 4 47 982
90 % 4 47 1007
70 % 4 47 1051
50 % 4 74 637
40 % 4 79 629
30 % 4 79 641
Entity #11 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 42 807
95 % 4 42 1121
90 % 4 42 1144
70 % 4 42 1188
50 % 4 46 1068
40 % 4 46 1083
30 % 4 70 707
Entity #12 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 323
95 % 4 74 478
90 % 4 74 509
70 % 4 74 554
50 % 4 74 641
40 % 5 77 649
30 % 5 78 651
Entity #13 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 24 1734
95 % 4 68 547
90 % 4 68 577
70 % 4 68 627
50 % 4 146 223
40 % 4 146 249
30 % 6 450 34
Entity #14 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 322
95 % 4 74 477
90 % 4 74 507
70 % 4 74 551
50 % 4 74 638
40 % 4 74 684
30 % 5 439 38
Entity #15 | Chains: M
50S ribosomal protein L15e protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 24 1688
95 % 4 47 978
90 % 4 47 1002
70 % 4 68 620
50 % 4 142 231
40 % 4 142 260
30 % 4 142 268
Entity #16 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 320
95 % 4 74 475
90 % 4 74 505
70 % 4 74 548
50 % 4 76 619
40 % 4 76 659
30 % 4 78 648
Entity #17 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 367
95 % 4 68 549
90 % 4 68 579
70 % 4 68 630
50 % 4 70 691
40 % 4 70 737
30 % 4 70 740
Entity #18 | Chains: P
50S ribosomal protein L19E protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 695
95 % 4 68 546
90 % 4 68 575
70 % 4 68 626
50 % 4 68 715
40 % 4 70 734
30 % 4 71 723
Entity #19 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 369
95 % 4 68 551
90 % 4 68 581
70 % 4 68 633
50 % 4 70 692
40 % 4 70 738
30 % 4 71 726
Entity #2 | Chains: 9
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 67 380
95 % 4 68 544
90 % 4 68 573
70 % 4 68 624
50 % 4 68 713
40 % 4 68 751
30 % 4 145 262
Entity #21 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 328
95 % 4 74 482
90 % 4 74 513
70 % 4 74 558
50 % 4 76 622
40 % 4 78 637
30 % 5 376 55
Entity #22 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 326
95 % 4 74 480
90 % 4 74 511
70 % 4 74 556
50 % 4 150 218
40 % 4 150 240
30 % 4 150 252
Entity #23 | Chains: U
50S ribosomal protein L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 70 349
95 % 4 70 521
90 % 4 70 549
70 % 4 70 601
50 % 4 70 693
40 % 4 70 739
30 % 4 70 741
Entity #24 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 329
95 % 4 74 483
90 % 4 74 514
70 % 4 74 559
50 % 4 74 643
40 % 4 74 689
30 % 4 74 692
Entity #25 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 364
95 % 4 68 545
90 % 4 68 574
70 % 4 68 625
50 % 4 68 714
40 % 4 70 732
30 % 4 71 722
Entity #26 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 371
95 % 4 68 553
90 % 4 68 583
70 % 4 68 635
50 % 4 68 719
40 % 4 68 755
30 % 4 68 759
Entity #27 | Chains: Y
50S ribosomal protein L32E protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 63 426
95 % 4 63 631
90 % 4 63 667
70 % 4 63 710
50 % 4 63 779
40 % 4 63 813
30 % 4 63 810
Entity #28 | Chains: Z
50S ribosomal protein L37Ae protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9693
95 % 1 7 9744
90 % 1 7 9629
70 % 1 7 9143
50 % 1 30 1792
40 % 1 99 369
30 % 4 122 316
Entity #29 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 372
95 % 4 68 554
90 % 4 68 584
70 % 4 68 636
50 % 4 69 703
40 % 4 69 746
30 % 4 69 752
Entity #3 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 689
95 % 4 68 541
90 % 4 68 569
70 % 4 68 619
50 % 4 141 230
40 % 4 143 253
30 % 4 143 263
Entity #30 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 705
95 % 4 68 556
90 % 4 68 586
70 % 4 68 637
50 % 4 143 226
40 % 4 143 254
30 % 4 143 264
Entity #31 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 370
95 % 4 68 552
90 % 4 68 582
70 % 4 68 634
50 % 4 68 718
40 % 4 68 754
30 % 4 140 274
Entity #4 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 67 376
95 % 4 74 468
90 % 4 74 498
70 % 4 74 544
50 % 4 74 632
40 % 4 150 238
30 % 4 150 251
Entity #5 | Chains: C
50S ribosomal protein L4E protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 44 757
95 % 4 74 471
90 % 4 74 501
70 % 4 74 547
50 % 4 74 634
40 % 4 76 658
30 % 4 77 658
Entity #6 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 321
95 % 4 74 476
90 % 4 74 506
70 % 4 74 549
50 % 4 74 636
40 % 4 151 237
30 % 4 151 250
Entity #7 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 363
95 % 4 68 543
90 % 4 68 572
70 % 4 68 623
50 % 4 68 712
40 % 4 145 251
30 % 6 445 37
Entity #8 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 697
95 % 4 47 984
90 % 4 68 578
70 % 4 68 628
50 % 14 103 297
40 % 19 117 270
30 % 19 119 282
Entity #9 | Chains: G
Acidic ribosomal protein P0 homolog protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 44 751
95 % 3 64 605
90 % 3 64 639
70 % 3 64 685
50 % 3 64 766
40 % 3 64 799
30 % 3 65 787

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.