Sequence Similarity Clusters for the Entities in PDB 1S72

Entity #1 | Chains: 0
23S ribosomal RNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L10e protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 799
95 % 4 47 1093
90 % 4 47 1112
70 % 4 47 1151
50 % 4 74 740
40 % 4 79 720
30 % 4 79 715
Entity #11 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 42 911
95 % 4 42 1235
90 % 4 42 1265
70 % 4 42 1292
50 % 4 46 1167
40 % 4 46 1180
30 % 4 85 627
Entity #12 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 448
95 % 4 74 619
90 % 4 74 647
70 % 4 74 692
50 % 4 74 745
40 % 5 77 740
30 % 5 78 725
Entity #13 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 24 1968
95 % 4 68 697
90 % 4 68 727
70 % 4 68 779
50 % 4 180 201
40 % 6 537 20
30 % 6 537 33
Entity #14 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 446
95 % 4 74 618
90 % 4 74 646
70 % 4 74 689
50 % 4 74 741
40 % 4 74 775
30 % 5 517 37
Entity #15 | Chains: M
50S ribosomal protein L15e protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 24 1917
95 % 4 47 1091
90 % 4 47 1109
70 % 4 68 770
50 % 4 176 205
40 % 4 176 227
30 % 4 176 238
Entity #16 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 444
95 % 4 74 616
90 % 4 74 644
70 % 4 74 686
50 % 4 76 716
40 % 4 76 751
30 % 4 79 713
Entity #17 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 513
95 % 4 68 699
90 % 4 68 730
70 % 4 68 782
50 % 4 70 793
40 % 4 70 830
30 % 4 70 817
Entity #18 | Chains: P
50S ribosomal protein L19E protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 801
95 % 4 68 696
90 % 4 68 725
70 % 4 68 777
50 % 4 68 821
40 % 4 72 803
30 % 4 72 793
Entity #19 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 514
95 % 4 68 701
90 % 4 68 732
70 % 4 68 784
50 % 4 70 794
40 % 4 70 831
30 % 4 71 806
Entity #2 | Chains: 9
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 67 523
95 % 4 68 694
90 % 4 68 723
70 % 4 68 774
50 % 4 68 818
40 % 4 68 854
30 % 4 179 230
Entity #21 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 451
95 % 4 74 622
90 % 4 74 650
70 % 4 74 696
50 % 4 76 721
40 % 4 78 729
30 % 5 420 58
Entity #22 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 450
95 % 4 74 621
90 % 4 74 649
70 % 4 74 694
50 % 4 183 199
40 % 4 184 217
30 % 4 184 226
Entity #23 | Chains: U
50S ribosomal protein L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 70 483
95 % 4 70 668
90 % 4 70 693
70 % 4 70 746
50 % 4 70 795
40 % 4 70 832
30 % 4 70 819
Entity #24 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 452
95 % 4 74 623
90 % 4 74 651
70 % 4 74 697
50 % 4 74 746
40 % 5 384 58
30 % 5 410 65
Entity #25 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 510
95 % 4 68 695
90 % 4 68 724
70 % 4 68 775
50 % 4 68 819
40 % 4 70 828
30 % 4 71 804
Entity #26 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 516
95 % 4 68 703
90 % 4 68 734
70 % 4 68 786
50 % 4 68 826
40 % 4 68 858
30 % 4 68 842
Entity #27 | Chains: Y
50S ribosomal protein L32E protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 63 560
95 % 4 63 778
90 % 4 63 807
70 % 4 63 849
50 % 4 63 897
40 % 4 63 923
30 % 4 63 904
Entity #28 | Chains: Z
50S ribosomal protein L37Ae protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 10682
95 % 1 7 10683
90 % 1 7 10552
70 % 1 7 10040
50 % 1 30 1977
40 % 1 134 287
30 % 4 157 261
Entity #29 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 517
95 % 4 68 704
90 % 4 68 735
70 % 4 68 787
50 % 4 69 808
40 % 4 69 843
30 % 4 69 832
Entity #3 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 796
95 % 4 68 691
90 % 4 68 719
70 % 4 68 769
50 % 4 175 204
40 % 4 177 224
30 % 4 177 234
Entity #30 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 806
95 % 4 68 705
90 % 4 68 736
70 % 4 68 788
50 % 4 177 203
40 % 4 177 225
30 % 4 177 235
Entity #31 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 515
95 % 4 68 702
90 % 4 68 733
70 % 4 68 785
50 % 4 68 825
40 % 4 68 857
30 % 4 173 243
Entity #4 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 67 521
95 % 4 74 608
90 % 4 74 638
70 % 4 74 682
50 % 4 74 734
40 % 4 184 215
30 % 4 184 224
Entity #5 | Chains: C
50S ribosomal protein L4E protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 44 857
95 % 4 74 612
90 % 4 74 642
70 % 4 74 684
50 % 4 74 736
40 % 4 76 749
30 % 4 78 721
Entity #6 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 445
95 % 4 74 617
90 % 4 74 645
70 % 4 74 687
50 % 4 74 739
40 % 4 184 216
30 % 4 184 225
Entity #7 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 509
95 % 4 68 693
90 % 4 68 721
70 % 4 68 772
50 % 4 68 817
40 % 4 178 222
30 % 6 528 36
Entity #8 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 802
95 % 4 47 1095
90 % 4 68 729
70 % 4 68 781
50 % 14 105 349
40 % 19 124 285
30 % 19 126 289
Entity #9 | Chains: G
Acidic ribosomal protein P0 homolog protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 44 851
95 % 3 64 754
90 % 3 64 786
70 % 3 64 826
50 % 3 64 878
40 % 3 64 902
30 % 3 65 876

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.