Sequence Similarity Clusters for the Entities in PDB 1S72

Entity #1 | Chains: 0
23S ribosomal RNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L10e protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 682
95 % 4 47 966
90 % 4 47 990
70 % 4 47 1032
50 % 4 74 630
40 % 4 79 616
30 % 4 79 626
Entity #11 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 42 798
95 % 4 42 1100
90 % 4 42 1121
70 % 4 42 1158
50 % 4 43 1168
40 % 4 43 1189
30 % 4 67 758
Entity #12 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 319
95 % 4 74 472
90 % 4 74 501
70 % 4 74 547
50 % 4 74 634
40 % 5 77 640
30 % 5 78 640
Entity #13 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 24 1690
95 % 4 68 537
90 % 4 68 565
70 % 4 68 616
50 % 4 145 221
40 % 4 145 247
30 % 6 442 34
Entity #14 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 318
95 % 4 74 471
90 % 4 74 499
70 % 4 74 544
50 % 4 74 631
40 % 4 74 676
30 % 5 431 37
Entity #15 | Chains: M
50S ribosomal protein L15e protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 24 1645
95 % 4 47 962
90 % 4 47 985
70 % 4 68 610
50 % 4 140 232
40 % 4 140 260
30 % 4 140 270
Entity #16 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 315
95 % 4 74 468
90 % 4 74 496
70 % 4 74 540
50 % 4 76 609
40 % 4 76 652
30 % 4 78 637
Entity #17 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 362
95 % 4 68 538
90 % 4 68 567
70 % 4 68 618
50 % 4 70 679
40 % 4 70 724
30 % 4 70 729
Entity #18 | Chains: P
50S ribosomal protein L19E protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 685
95 % 4 68 536
90 % 4 68 564
70 % 4 68 615
50 % 4 68 706
40 % 4 70 721
30 % 4 71 711
Entity #19 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 363
95 % 4 68 540
90 % 4 68 570
70 % 4 68 621
50 % 4 70 681
40 % 4 70 726
30 % 4 71 715
Entity #2 | Chains: 9
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 67 372
95 % 4 68 534
90 % 4 68 562
70 % 4 68 613
50 % 4 68 703
40 % 4 68 743
30 % 4 144 257
Entity #21 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 323
95 % 4 74 476
90 % 4 74 505
70 % 4 74 551
50 % 4 76 611
40 % 4 78 628
30 % 5 369 54
Entity #22 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 321
95 % 4 74 474
90 % 4 74 503
70 % 4 74 549
50 % 4 149 215
40 % 4 149 240
30 % 4 149 252
Entity #23 | Chains: U
50S ribosomal protein L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 70 346
95 % 4 70 515
90 % 4 70 542
70 % 4 70 591
50 % 4 70 682
40 % 4 70 727
30 % 4 70 730
Entity #24 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 324
95 % 4 74 477
90 % 4 74 506
70 % 4 74 552
50 % 4 74 637
40 % 4 74 681
30 % 4 74 679
Entity #25 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 360
95 % 4 68 535
90 % 4 68 563
70 % 4 68 614
50 % 4 68 704
40 % 4 70 720
30 % 4 71 710
Entity #26 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 365
95 % 4 68 542
90 % 4 68 572
70 % 4 68 623
50 % 4 68 709
40 % 4 68 748
30 % 4 68 751
Entity #27 | Chains: Y
50S ribosomal protein L32E protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 63 414
95 % 4 63 614
90 % 4 63 647
70 % 4 63 683
50 % 4 63 762
40 % 4 63 797
30 % 4 63 799
Entity #28 | Chains: Z
50S ribosomal protein L37Ae protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9518
95 % 1 7 9573
90 % 1 7 9466
70 % 1 7 8989
50 % 1 30 1757
40 % 1 98 363
30 % 4 121 316
Entity #29 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 366
95 % 4 68 543
90 % 4 68 573
70 % 4 68 624
50 % 4 69 694
40 % 4 69 737
30 % 4 69 743
Entity #3 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 679
95 % 4 68 531
90 % 4 68 559
70 % 4 68 609
50 % 4 140 231
40 % 4 142 255
30 % 4 142 261
Entity #30 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 696
95 % 4 68 545
90 % 4 68 574
70 % 4 68 625
50 % 4 142 226
40 % 4 142 256
30 % 4 142 263
Entity #31 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 364
95 % 4 68 541
90 % 4 68 571
70 % 4 68 622
50 % 4 68 708
40 % 4 68 747
30 % 4 139 272
Entity #4 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 67 370
95 % 4 74 461
90 % 4 74 490
70 % 4 74 536
50 % 4 74 622
40 % 4 149 235
30 % 4 149 247
Entity #5 | Chains: C
50S ribosomal protein L4E protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 44 749
95 % 4 74 464
90 % 4 74 493
70 % 4 74 539
50 % 4 74 625
40 % 4 76 651
30 % 4 77 644
Entity #6 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 317
95 % 4 74 470
90 % 4 74 498
70 % 4 74 542
50 % 4 74 629
40 % 4 150 233
30 % 4 150 246
Entity #7 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 359
95 % 4 68 533
90 % 4 68 561
70 % 4 68 612
50 % 4 68 702
40 % 4 144 248
30 % 6 437 36
Entity #8 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 688
95 % 4 47 968
90 % 4 68 566
70 % 4 68 617
50 % 14 98 342
40 % 19 112 311
30 % 19 114 321
Entity #9 | Chains: G
Acidic ribosomal protein P0 homolog protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 44 743
95 % 3 64 591
90 % 3 64 622
70 % 3 64 665
50 % 3 64 750
40 % 3 64 783
30 % 3 65 778

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.