Sequence Similarity Clusters for the Entities in PDB 1S72

Entity #1 | Chains: 0
23S ribosomal RNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L10e protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 678
95 % 4 47 958
90 % 4 47 981
70 % 4 47 1022
50 % 4 74 625
40 % 4 79 609
30 % 4 79 617
Entity #11 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 42 795
95 % 4 42 1089
90 % 4 42 1110
70 % 4 42 1149
50 % 4 43 1160
40 % 4 43 1181
30 % 4 67 752
Entity #12 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 313
95 % 4 74 466
90 % 4 74 494
70 % 4 74 539
50 % 4 74 629
40 % 5 77 633
30 % 5 78 632
Entity #13 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 24 1680
95 % 4 68 531
90 % 4 68 559
70 % 4 68 612
50 % 4 144 216
40 % 4 144 244
30 % 6 431 32
Entity #14 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 312
95 % 4 74 465
90 % 4 74 492
70 % 4 74 537
50 % 4 74 626
40 % 4 74 669
30 % 5 420 40
Entity #15 | Chains: M
50S ribosomal protein L15e protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 24 1636
95 % 4 47 954
90 % 4 47 976
70 % 4 68 606
50 % 4 139 229
40 % 4 139 258
30 % 4 139 268
Entity #16 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 310
95 % 4 74 463
90 % 4 74 490
70 % 4 74 534
50 % 4 76 605
40 % 4 76 647
30 % 4 78 629
Entity #17 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 358
95 % 4 68 533
90 % 4 68 562
70 % 4 68 614
50 % 4 70 677
40 % 4 70 718
30 % 4 70 725
Entity #18 | Chains: P
50S ribosomal protein L19E protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 681
95 % 4 68 530
90 % 4 68 558
70 % 4 68 611
50 % 4 68 705
40 % 4 70 716
30 % 4 71 708
Entity #19 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 359
95 % 4 68 534
90 % 4 68 564
70 % 4 68 616
50 % 4 70 679
40 % 4 70 720
30 % 4 71 711
Entity #2 | Chains: 9
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 67 369
95 % 4 68 528
90 % 4 68 556
70 % 4 68 609
50 % 4 68 702
40 % 4 68 737
30 % 4 143 257
Entity #21 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 317
95 % 4 74 471
90 % 4 74 499
70 % 4 74 544
50 % 4 76 607
40 % 4 78 623
30 % 5 359 54
Entity #22 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 315
95 % 4 74 469
90 % 4 74 497
70 % 4 74 542
50 % 4 148 213
40 % 4 148 239
30 % 4 148 251
Entity #23 | Chains: U
50S ribosomal protein L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 70 345
95 % 4 70 511
90 % 4 70 537
70 % 4 70 588
50 % 4 70 680
40 % 4 70 721
30 % 4 70 726
Entity #24 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 318
95 % 4 74 472
90 % 4 74 500
70 % 4 74 545
50 % 4 74 633
40 % 4 74 674
30 % 4 74 672
Entity #25 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 356
95 % 4 68 529
90 % 4 68 557
70 % 4 68 610
50 % 4 68 703
40 % 4 70 715
30 % 4 71 707
Entity #26 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 361
95 % 4 68 536
90 % 4 68 566
70 % 4 68 618
50 % 4 68 707
40 % 4 68 741
30 % 4 68 745
Entity #27 | Chains: Y
50S ribosomal protein L32E protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 63 406
95 % 4 63 605
90 % 4 63 638
70 % 4 63 677
50 % 4 63 759
40 % 4 63 793
30 % 4 63 797
Entity #28 | Chains: Z
50S ribosomal protein L37Ae protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9427
95 % 1 7 9489
90 % 1 7 9383
70 % 1 7 8914
50 % 1 30 1742
40 % 1 97 359
30 % 4 120 315
Entity #29 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 363
95 % 4 68 538
90 % 4 68 568
70 % 4 68 620
50 % 4 69 693
40 % 4 69 731
30 % 4 69 739
Entity #3 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 675
95 % 4 68 525
90 % 4 68 553
70 % 4 68 605
50 % 4 139 228
40 % 4 141 254
30 % 4 141 263
Entity #30 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 692
95 % 4 68 540
90 % 4 68 569
70 % 4 68 621
50 % 4 141 224
40 % 4 141 255
30 % 4 141 265
Entity #31 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 360
95 % 4 68 535
90 % 4 68 565
70 % 4 68 617
50 % 4 68 706
40 % 4 68 740
30 % 4 138 270
Entity #4 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 67 367
95 % 4 74 455
90 % 4 74 483
70 % 4 74 529
50 % 4 74 618
40 % 4 148 237
30 % 4 148 249
Entity #5 | Chains: C
50S ribosomal protein L4E protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 44 745
95 % 4 74 458
90 % 4 74 486
70 % 4 74 532
50 % 4 74 621
40 % 4 76 646
30 % 4 77 636
Entity #6 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 311
95 % 4 74 464
90 % 4 74 491
70 % 4 74 535
50 % 4 74 624
40 % 4 148 238
30 % 4 148 250
Entity #7 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 355
95 % 4 68 527
90 % 4 68 555
70 % 4 68 608
50 % 4 68 701
40 % 4 143 246
30 % 6 426 37
Entity #8 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 47 684
95 % 4 47 960
90 % 4 68 561
70 % 4 68 613
50 % 14 96 348
40 % 19 110 310
30 % 19 112 323
Entity #9 | Chains: G
Acidic ribosomal protein P0 homolog protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 44 739
95 % 3 64 581
90 % 3 64 614
70 % 3 64 660
50 % 3 64 747
40 % 3 64 776
30 % 3 65 773

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.