Sequence Similarity Clusters for the Entities in PDB 1S72

Entity #1 | Chains: 0
23S ribosomal RNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L10e protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 47 825
95 % 4 47 1132 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 4 47 1152
70 % 4 47 1186
50 % 4 74 761
40 % 4 79 742
30 % 4 79 739
Entity #11 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 42 944
95 % 4 42 1271 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 4 42 1301
70 % 4 42 1328
50 % 4 46 1200
40 % 4 46 1215
30 % 4 85 640
Entity #12 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 74 463
95 % 4 74 640 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 4 74 666
70 % 4 74 711
50 % 4 74 765
40 % 5 77 765
30 % 5 78 755
Entity #13 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 24 2050
95 % 4 68 719 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 4 68 752
70 % 4 68 798
50 % 4 189 199
40 % 6 556 20
30 % 6 556 35
Entity #14 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 74 461
95 % 4 74 639 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 4 74 665
70 % 4 74 710
50 % 4 74 762
40 % 4 74 799
30 % 5 533 39
Entity #15 | Chains: M
50S ribosomal protein L15e protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 24 2002
95 % 4 47 1130 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 4 47 1148
70 % 4 68 789
50 % 4 186 202
40 % 4 186 222
30 % 4 186 230
Entity #16 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 74 459
95 % 4 74 637 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 74 663
70 % 4 74 707
50 % 4 76 740
40 % 4 76 776
30 % 4 79 736
Entity #17 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 68 530
95 % 4 68 721 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 4 68 755
70 % 4 68 801
50 % 4 70 810
40 % 4 70 850
30 % 4 70 835
Entity #18 | Chains: P
50S ribosomal protein L19E protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 47 827
95 % 4 68 717 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 4 68 751
70 % 4 68 797
50 % 4 68 842
40 % 4 72 822
30 % 4 72 810
Entity #19 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 68 531
95 % 4 68 723 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 4 68 757
70 % 4 68 803
50 % 4 70 811
40 % 4 70 851
30 % 4 71 822
Entity #2 | Chains: 9
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 67 543
95 % 4 68 715 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 4 68 749
70 % 4 68 794
50 % 4 68 839
40 % 4 68 877
30 % 4 189 225
Entity #21 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 74 467
95 % 4 74 644 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 4 74 669
70 % 4 74 714
50 % 4 76 745
40 % 4 78 754
30 % 5 430 62
Entity #22 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 74 466
95 % 4 74 642 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 4 74 668
70 % 4 74 713
50 % 4 193 197
40 % 4 194 210
30 % 4 194 220
Entity #23 | Chains: U
50S ribosomal protein L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 70 500
95 % 4 70 693 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 4 70 722
70 % 4 70 764
50 % 4 70 812
40 % 4 70 852
30 % 4 70 837
Entity #24 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 74 468
95 % 4 74 645
90 % 4 74 670
70 % 4 74 715
50 % 4 74 767
40 % 5 391 54
30 % 5 417 68
Entity #25 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 528
95 % 4 68 716
90 % 4 68 750
70 % 4 68 795
50 % 4 68 840
40 % 4 70 849
30 % 4 71 820
Entity #26 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 68 533
95 % 4 68 725 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 4 68 759
70 % 4 68 805
50 % 4 68 847
40 % 4 68 880
30 % 4 68 863
Entity #27 | Chains: Y
50S ribosomal protein L32E protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 63 584
95 % 4 63 800 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 4 63 830
70 % 4 63 867
50 % 4 63 920
40 % 4 63 948
30 % 4 63 927
Entity #28 | Chains: Z
50S ribosomal protein L37Ae protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 11031
95 % 1 7 11004
90 % 1 7 10860
70 % 1 7 10310
50 % 1 30 2040
40 % 1 139 282
30 % 4 162 254
Entity #29 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 68 534
95 % 4 68 726 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 4 68 760
70 % 4 68 806
50 % 4 69 826
40 % 4 69 864
30 % 4 69 849
Entity #3 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 47 821
95 % 4 68 712 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 4 68 745
70 % 4 68 788
50 % 4 180 207
40 % 4 182 223
30 % 4 182 234
Entity #30 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 47 832
95 % 4 68 727 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 4 68 761
70 % 4 68 807
50 % 4 182 205
40 % 4 182 224
30 % 4 182 236
Entity #31 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 68 532
95 % 4 68 724
90 % 4 68 758
70 % 4 68 804
50 % 4 68 846
40 % 4 68 879
30 % 4 178 239
Entity #4 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 67 538
95 % 4 74 629 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 4 74 657
70 % 4 74 702
50 % 4 74 754
40 % 4 193 211
30 % 4 193 221
Entity #5 | Chains: C
50S ribosomal protein L4E protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 44 890
95 % 4 74 632 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 4 74 660
70 % 4 74 704
50 % 4 74 756
40 % 4 76 771
30 % 4 78 749
Entity #6 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 74 460
95 % 4 74 638 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 4 74 664
70 % 4 74 708
50 % 4 74 760
40 % 4 189 216
30 % 4 189 226
Entity #7 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 68 527
95 % 4 68 714 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 4 68 747
70 % 4 68 792
50 % 4 68 838
40 % 4 186 220
30 % 6 546 38
Entity #8 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 47 828
95 % 4 47 1134 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 4 68 754
70 % 4 68 800
50 % 14 105 380
40 % 19 126 291
30 % 19 128 296
Entity #9 | Chains: G
Acidic ribosomal protein P0 homolog protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 44 883
95 % 3 64 777 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 64 810
70 % 3 64 846
50 % 3 64 902
40 % 3 64 924
30 % 3 65 900

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures