Sequence Similarity Clusters for the Entities in PDB 1S6Q

Entity #1 | Chains: A
POL polyprotein [Contains: Reverse transcriptase] protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 26 1140
95 % 198 238 104 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 198 238 109
70 % 198 238 124
50 % 199 239 152
40 % 199 239 170
30 % 199 239 184
Entity #2 | Chains: B
POL polyprotein [Contains: Reverse transcriptase] protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 75 95 213
95 % 193 232 115 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.6
PDBFlex
90 % 193 232 118
70 % 193 232 135
50 % 194 233 161
40 % 194 233 178
30 % 194 233 192

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.