Sequence Similarity Clusters for the Entities in PDB 1S6P

Entity #1 | Chains: A
POL polyprotein [Contains: Reverse transcriptase] protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 24 1226
95 % 182 236 104
90 % 182 236 108
70 % 182 236 123
50 % 183 237 149
40 % 183 237 166
30 % 183 237 183
Entity #2 | Chains: B
POL polyprotein [Contains: Reverse transcriptase] protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 93 212
95 % 177 230 111
90 % 177 230 116
70 % 177 230 136
50 % 178 231 160
40 % 178 231 177
30 % 178 231 192

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.