Sequence Similarity Clusters for the Entities in PDB 1S6P

Entity #1 | Chains: A
POL polyprotein [Contains: Reverse transcriptase] protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 1190
95 % 193 248 94 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 193 248 99
70 % 193 248 117
50 % 194 249 151
40 % 194 249 166
30 % 194 249 180
Entity #2 | Chains: B
POL polyprotein [Contains: Reverse transcriptase] protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 76 105 204
95 % 188 242 118 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 188 242 123
70 % 188 242 139
50 % 189 243 158
40 % 189 243 175
30 % 189 243 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures