Sequence Similarity Clusters for the Entities in PDB 1S3T

Entity #1 | Chains: A
Urease gamma subunit protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 7254
95 % 13 13 5019 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 13 13 5035
70 % 33 44 1219
50 % 34 46 1035
40 % 34 46 1045
30 % 34 46 1022
Entity #2 | Chains: B
Urease beta subunit protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 13 4224
95 % 13 13 4998 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 13 13 5019
70 % 13 13 4956
50 % 13 13 4757
40 % 13 13 4505
30 % 13 13 4127
Entity #3 | Chains: C
Urease alpha subunit protein, length: 570 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 7493
95 % 13 13 4801 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 13 13 4816
70 % 13 13 4731
50 % 33 49 897
40 % 33 49 920
30 % 33 49 900

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.