Sequence Similarity Clusters for the Entities in PDB 1S3T

Entity #1 | Chains: A
Urease gamma subunit protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 7459
95 % 13 13 5209 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 13 13 5229
70 % 33 44 1254
50 % 34 46 1067
40 % 34 46 1074
30 % 34 46 1055
Entity #2 | Chains: B
Urease beta subunit protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 13 4394
95 % 13 13 5188 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 13 13 5211
70 % 13 13 5124
50 % 13 13 4900
40 % 13 13 4641
30 % 13 13 4247
Entity #3 | Chains: C
Urease alpha subunit protein, length: 570 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 7701
95 % 13 13 4980 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 13 13 4994
70 % 13 13 4885
50 % 33 49 921
40 % 33 49 947
30 % 33 49 924

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.