Sequence Similarity Clusters for the Entities in PDB 1S3T

Entity #1 | Chains: A
Urease gamma subunit protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 7766
95 % 14 14 5120 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 14 14 5142
70 % 34 45 1253
50 % 35 47 1080
40 % 35 47 1092
30 % 35 47 1073
Entity #2 | Chains: B
Urease beta subunit protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 14 4289
95 % 14 14 5089 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 14 14 5111
70 % 14 14 4983
50 % 14 14 4764
40 % 14 14 4516
30 % 14 14 4151
Entity #3 | Chains: C
Urease alpha subunit protein, length: 570 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 8030
95 % 14 14 4767 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 14 14 4796
70 % 14 14 4687
50 % 34 50 924
40 % 34 50 950
30 % 34 50 935

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures