Sequence Similarity Clusters for the Entities in PDB 1RZK

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 9 2628
95 % 5 9 3317
90 % 7 12 2472
70 % 78 122 167
50 % 78 122 198
40 % 78 122 214
30 % 78 125 226
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 34 734
95 % 24 39 855
90 % 24 39 889
70 % 24 39 930
50 % 24 39 979
40 % 24 39 994
30 % 24 39 986
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 20 1252
95 % 18 23 1532
90 % 410 585 3
70 % 1158 1648 3
50 % 2803 4012 1
40 % 2804 4014 1
30 % 3284 4750 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 20 1250
95 % 18 23 1528
90 % 18 23 1564
70 % 1357 1945 1
50 % 2804 4012 1
40 % 2805 4014 1
30 % 3285 4750 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.