Sequence Similarity Clusters for the Entities in PDB 1RZK

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 9 2774
95 % 5 9 3480
90 % 7 12 2641
70 % 81 125 172
50 % 81 125 211
40 % 81 125 234
30 % 81 128 239
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 35 717
95 % 24 40 859
90 % 24 40 891
70 % 24 40 922
50 % 24 40 966
40 % 24 40 989
30 % 24 40 971
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 21 1166
95 % 18 24 1442
90 % 439 632 3
70 % 1229 1752 2
50 % 2973 4272 1
40 % 2973 4272 1
30 % 3477 5038 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 21 1164
95 % 18 24 1440
90 % 18 24 1466
70 % 1436 2066 1
50 % 2974 4272 1
40 % 2974 4272 1
30 % 3478 5038 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.