Sequence Similarity Clusters for the Entities in PDB 1RZK

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 9 2793
95 % 5 9 3503
90 % 7 12 2667
70 % 82 126 174
50 % 82 126 213
40 % 82 126 235
30 % 82 129 238
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 35 738
95 % 24 40 889
90 % 24 40 921
70 % 24 40 946
50 % 24 40 979
40 % 24 40 998
30 % 24 40 977
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 21 1183
95 % 18 24 1461
90 % 445 640 3
70 % 1240 1765 2
50 % 3030 4337 1
40 % 3030 4337 1
30 % 3540 5109 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 21 1181
95 % 18 24 1458
90 % 18 24 1483
70 % 1463 2096 1
50 % 3031 4337 1
40 % 3031 4337 1
30 % 3541 5109 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.