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HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1RZK
Sequence Clusters for the Sequence Entities in PDB 1RZK
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 7 4286
95% 5 7 4884
90% 7 10 3130
70% 21 29 1101
50% 21 29 1159
40% 21 29 1185
30% 21 31 1080
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 30 852
95% 24 35 965
90% 24 35 985
70% 24 35 1015
50% 24 35 1057
40% 24 35 1085
30% 24 35 1061
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 18 1540
95% 18 21 1691
90% 275 389 5
70% 984 1366 3
50% 2332 3252 1
40% 2333 3253 1
30% 2709 3839 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 18 1539
95% 18 21 1689
90% 18 21 1737
70% 1124 1569 2
50% 2333 3252 1
40% 2334 3253 1
30% 2710 3839 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.