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HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1RZK
Sequence Clusters for the Sequence Entities in PDB 1RZK
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 7 4156
95% 5 7 4748
90% 7 10 3049
70% 21 29 1075
50% 21 29 1140
40% 21 29 1161
30% 21 31 1061
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 30 835
95% 24 35 936
90% 24 35 956
70% 24 35 991
50% 24 35 1037
40% 24 35 1062
30% 24 35 1040
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 18 1495
95% 18 21 1655
90% 267 377 5
70% 962 1332 3
50% 2274 3170 1
40% 2275 3171 1
30% 2649 3753 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 18 1494
95% 18 21 1653
90% 18 21 1698
70% 1095 1528 2
50% 2275 3170 1
40% 2276 3171 1
30% 2650 3753 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.