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HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1RZK
Sequence Clusters for the Sequence Entities in PDB 1RZK
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 6 4379
95% 5 6 4980
90% 7 9 3135
70% 21 27 1155
50% 21 27 1219
40% 21 27 1254
30% 21 29 1154
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 28 923
95% 24 33 980
90% 24 33 1004
70% 24 33 1036
50% 24 33 1104
40% 24 33 1131
30% 24 33 1120
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 17 1437
95% 18 20 1586
90% 261 366 4
70% 938 1292 3
50% 2222 3072 1
40% 2223 3073 1
30% 2585 3633 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 17 1434
95% 18 20 1582
90% 18 20 1630
70% 1071 1481 2
50% 2223 3072 1
40% 2224 3073 1
30% 2586 3633 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.