Sequence Similarity Clusters for the Entities in PDB 1RZK

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 9 2609
95 % 5 9 3289
90 % 7 12 2452
70 % 78 121 167
50 % 78 121 199
40 % 78 121 217
30 % 78 124 223
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 34 730
95 % 24 39 848
90 % 24 39 883
70 % 24 39 924
50 % 24 39 972
40 % 24 39 987
30 % 24 39 982
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 20 1241
95 % 18 23 1515
90 % 351 518 3
70 % 1151 1639 3
50 % 2782 3985 1
40 % 2783 3986 1
30 % 3259 4715 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 20 1239
95 % 18 23 1511
90 % 18 23 1543
70 % 1347 1932 1
50 % 2783 3985 1
40 % 2784 3986 1
30 % 3260 4715 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.