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HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1RZK
Sequence Clusters for the Sequence Entities in PDB 1RZK
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 7 4203
95% 5 7 4796
90% 7 10 3088
70% 21 29 1085
50% 21 29 1145
40% 21 29 1170
30% 21 31 1068
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 30 843
95% 24 35 947
90% 24 35 965
70% 24 35 998
50% 24 35 1043
40% 24 35 1069
30% 24 35 1048
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 18 1514
95% 18 21 1668
90% 269 380 5
70% 967 1339 3
50% 2288 3188 1
40% 2289 3189 1
30% 2663 3771 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 18 1513
95% 18 21 1666
90% 18 21 1713
70% 1102 1537 2
50% 2289 3188 1
40% 2290 3189 1
30% 2664 3771 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.