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HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1RZK
Sequence Clusters for the Sequence Entities in PDB 1RZK
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 7 4258
95% 5 7 4863
90% 7 10 3115
70% 21 29 1093
50% 21 29 1152
40% 21 29 1178
30% 21 31 1075
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 30 852
95% 24 35 957
90% 24 35 976
70% 24 35 1008
50% 24 35 1050
40% 24 35 1079
30% 24 35 1056
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 18 1529
95% 18 21 1682
90% 275 389 4
70% 974 1350 3
50% 2310 3218 1
40% 2311 3219 1
30% 2685 3801 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 18 1528
95% 18 21 1680
90% 18 21 1728
70% 1113 1552 2
50% 2311 3218 1
40% 2312 3219 1
30% 2686 3801 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.