Sequence Similarity Clusters for the Entities in PDB 1RZK

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 9 2528
95 % 5 9 3218
90 % 7 12 2377
70 % 78 120 165
50 % 78 120 196
40 % 78 120 212
30 % 78 123 222
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 34 715
95 % 24 39 812
90 % 24 39 851
70 % 24 39 900
50 % 24 39 947
40 % 24 39 968
30 % 24 39 962
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 20 1205
95 % 18 23 1474
90 % 331 482 4
70 % 1116 1583 3
50 % 2695 3846 1
40 % 2696 3847 1
30 % 3170 4574 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 20 1203
95 % 18 23 1470
90 % 18 23 1499
70 % 1306 1866 1
50 % 2696 3846 1
40 % 2697 3847 1
30 % 3171 4574 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.