Sequence Similarity Clusters for the Entities in PDB 1RZK

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 9 2573
95 % 5 9 3265
90 % 7 12 2422
70 % 78 121 166
50 % 78 121 198
40 % 78 121 214
30 % 78 124 223
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 34 727
95 % 24 39 841
90 % 24 39 875
70 % 24 39 917
50 % 24 39 961
40 % 24 39 980
30 % 24 39 974
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 20 1221
95 % 18 23 1491
90 % 345 503 3
70 % 1139 1617 3
50 % 2754 3934 1
40 % 2755 3935 1
30 % 3230 4663 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 20 1219
95 % 18 23 1487
90 % 18 23 1518
70 % 1335 1909 1
50 % 2755 3934 1
40 % 2756 3935 1
30 % 3231 4663 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.