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HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1RZK
Sequence Clusters for the Sequence Entities in PDB 1RZK
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 7 4353
95% 5 7 4971
90% 7 10 3166
70% 21 29 1112
50% 21 29 1172
40% 21 29 1197
30% 21 31 1093
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 30 865
95% 24 35 982
90% 24 35 1003
70% 24 35 1034
50% 24 35 1076
40% 24 35 1096
30% 24 35 1073
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 18 1555
95% 18 21 1716
90% 291 414 4
70% 998 1404 3
50% 2369 3339 1
40% 2370 3340 1
30% 2760 3953 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 18 1553
95% 18 21 1714
90% 18 21 1761
70% 1144 1614 2
50% 2370 3339 1
40% 2371 3340 1
30% 2761 3953 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.