Sequence Similarity Clusters for the Entities in PDB 1RZJ

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 31360
95 % 11 15 3515
90 % 11 15 3552
70 % 62 120 166
50 % 62 120 196
40 % 62 120 213
30 % 62 123 222
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 34 723
95 % 17 39 831
90 % 17 39 865
70 % 17 39 906
50 % 17 39 950
40 % 17 39 972
30 % 17 39 967
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 20 1212
95 % 13 23 1483
90 % 243 500 4
70 % 825 1609 3
50 % 2011 3902 1
40 % 2012 3903 1
30 % 2298 4631 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 20 1210
95 % 13 23 1479
90 % 13 23 1510
70 % 982 1894 1
50 % 2012 3902 1
40 % 2013 3903 1
30 % 2299 4631 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.