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HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1RZJ
Sequence Clusters for the Sequence Entities in PDB 1RZJ
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 26698
95% 11 15 2918
90% 11 15 2961
70% 14 28 1051
50% 14 28 1138
40% 14 28 1159
30% 14 30 1080
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 29 816
95% 17 34 893
90% 17 34 915
70% 17 34 954
50% 17 34 1033
40% 17 34 1066
30% 17 34 1043
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 17 1518
95% 13 20 1669
90% 182 368 4
70% 679 1297 3
50% 1622 3090 1
40% 1623 3091 1
30% 1829 3653 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 17 1515
95% 13 20 1665
90% 13 20 1711
70% 788 1490 2
50% 1623 3090 1
40% 1624 3091 1
30% 1830 3653 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.