Sequence Similarity Clusters for the Entities in PDB 1RZJ

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 35281
95 % 11 15 3968
90 % 11 15 4005
70 % 64 126 178
50 % 64 126 221
40 % 64 126 240
30 % 64 129 248
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 38 698
95 % 17 43 833
90 % 17 43 863
70 % 17 43 895
50 % 17 43 940
40 % 17 43 967
30 % 17 43 939
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 21 1264
95 % 15 32 1109
90 % 350 695 3
70 % 1148 2274 1
50 % 2349 4607 1
40 % 2349 4607 1
30 % 2684 5422 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 21 1262
95 % 13 25 1386
90 % 13 25 1411
70 % 1142 2232 2
50 % 2350 4607 1
40 % 2350 4607 1
30 % 2685 5422 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.