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HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1RZJ
Sequence Clusters for the Sequence Entities in PDB 1RZJ
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 28210
95% 11 15 3113
90% 11 15 3153
70% 14 29 1109
50% 14 29 1168
40% 14 29 1193
30% 14 31 1090
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 30 863
95% 17 35 978
90% 17 35 998
70% 17 35 1026
50% 17 35 1066
40% 17 35 1092
30% 17 35 1070
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 18 1549
95% 13 21 1704
90% 203 413 4
70% 712 1391 3
50% 1711 3311 1
40% 1712 3312 1
30% 1927 3921 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 18 1548
95% 13 21 1702
90% 13 21 1749
70% 828 1595 2
50% 1712 3311 1
40% 1713 3312 1
30% 1928 3921 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.