Sequence Similarity Clusters for the Entities in PDB 1RZJ

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 30923
95 % 11 15 3460
90 % 11 15 3497
70 % 62 118 167
50 % 62 118 198
40 % 62 118 214
30 % 62 121 225
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 34 702
95 % 17 39 782
90 % 17 39 818
70 % 17 39 864
50 % 17 39 928
40 % 17 39 955
30 % 17 39 950
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 20 1196
95 % 13 23 1465
90 % 232 475 4
70 % 801 1565 3
50 % 1960 3804 1
40 % 1961 3805 1
30 % 2231 4512 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 20 1194
95 % 13 23 1461
90 % 13 23 1490
70 % 957 1846 1
50 % 1961 3804 1
40 % 1962 3805 1
30 % 2232 4512 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.