Sequence Similarity Clusters for the Entities in PDB 1RZJ

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 32727
95 % 11 15 3688
90 % 11 15 3726
70 % 63 125 168
50 % 63 125 201
40 % 63 125 221
30 % 63 128 228
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 35 694
95 % 17 40 827
90 % 17 40 860
70 % 17 40 901
50 % 17 40 942
40 % 17 40 963
30 % 17 40 949
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 21 1126
95 % 13 24 1406
90 % 311 613 3
70 % 879 1704 2
50 % 2148 4154 1
40 % 2148 4155 1
30 % 2439 4901 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 21 1124
95 % 13 24 1404
90 % 13 24 1429
70 % 1044 2010 1
50 % 2149 4154 1
40 % 2149 4155 1
30 % 2440 4901 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.