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HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1RZJ
Sequence Clusters for the Sequence Entities in PDB 1RZJ
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 28045
95% 11 15 3094
90% 11 15 3132
70% 14 29 1103
50% 14 29 1160
40% 14 29 1186
30% 14 31 1081
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 30 857
95% 17 35 968
90% 17 35 988
70% 17 35 1018
50% 17 35 1059
40% 17 35 1086
30% 17 35 1063
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 18 1542
95% 13 21 1696
90% 203 410 4
70% 708 1377 3
50% 1696 3274 1
40% 1697 3275 1
30% 1912 3863 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 18 1541
95% 13 21 1694
90% 13 21 1741
70% 824 1580 2
50% 1697 3274 1
40% 1698 3275 1
30% 1913 3863 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.