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HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1RZJ
Sequence Clusters for the Sequence Entities in PDB 1RZJ
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 28678
95% 11 15 3166
90% 11 15 3203
70% 14 29 1119
50% 14 29 1187
40% 14 29 1214
30% 14 31 1105
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 30 876
95% 17 35 993
90% 17 35 1014
70% 17 35 1043
50% 17 35 1088
40% 17 35 1112
30% 17 35 1085
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 18 1570
95% 13 21 1744
90% 209 425 4
70% 735 1434 3
50% 1771 3425 1
40% 1772 3426 1
30% 1991 4043 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 18 1568
95% 13 21 1741
90% 13 21 1786
70% 863 1656 1
50% 1772 3425 1
40% 1773 3426 1
30% 1992 4043 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.