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HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1RZJ
Sequence Clusters for the Sequence Entities in PDB 1RZJ
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 26916
95% 11 15 2949
90% 11 15 2989
70% 14 28 1083
50% 14 28 1150
40% 14 28 1171
30% 14 30 1091
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 29 851
95% 17 34 952
90% 17 34 971
70% 17 34 999
50% 17 34 1047
40% 17 34 1077
30% 17 34 1054
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 17 1538
95% 13 20 1684
90% 183 370 5
70% 682 1303 3
50% 1630 3106 1
40% 1631 3107 1
30% 1842 3679 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 17 1534
95% 13 20 1680
90% 13 20 1727
70% 792 1498 2
50% 1631 3106 1
40% 1632 3107 1
30% 1843 3679 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.