Sequence Similarity Clusters for the Entities in PDB 1RZI

Entity #1 | Chains: A,C,E,G,I,K,M,O
Fab 47e light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9119
95 % 123 170 67 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 566 721 3
70 % 1808 2329 1
50 % 3669 4717 1
40 % 3669 4717 1
30 % 4351 5571 1
Entity #2 | Chains: B,D,F,H,J,L,N,P
Fab 47e heavy chain protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 8984
95 % 1 1 9232 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 1 1 9138
70 % 1771 2282 2
50 % 3670 4717 1
40 % 3670 4717 1
30 % 4352 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.