Sequence Similarity Clusters for the Entities in PDB 1RZI

Entity #1 | Chains: A,C,E,G,I,K,M,O
Fab 47e light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9329
95 % 139 192 62 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 599 763 2
70 % 1888 2426 1
50 % 3831 4913 1
40 % 3831 4913 1
30 % 4524 5780 1
Entity #2 | Chains: B,D,F,H,J,L,N,P
Fab 47e heavy chain protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9191
95 % 1 1 9408 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 1 1 9313
70 % 1848 2376 2
50 % 3832 4913 1
40 % 3832 4913 1
30 % 4525 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures