Sequence Similarity Clusters for the Entities in PDB 1RZI

Entity #1 | Chains: A,C,E,G,I,K,M,O
Fab 47e light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9495
95 % 151 209 56 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 622 788 2
70 % 1924 2474 1
50 % 3905 5011 1
40 % 3905 5011 1
30 % 4658 5941 1
Entity #2 | Chains: B,D,F,H,J,L,N,P
Fab 47e heavy chain protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9352
95 % 1 1 9550 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 1 1 9453
70 % 1884 2424 2
50 % 3906 5011 1
40 % 3906 5011 1
30 % 4659 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures