Sequence Similarity Clusters for the Entities in PDB 1RZI

Entity #1 | Chains: A,C,E,G,I,K,M,O
Fab 47e light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9250
95 % 136 186 64 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 586 746 3
70 % 1861 2392 1
50 % 3775 4843 1
40 % 3775 4843 1
30 % 4464 5705 1
Entity #2 | Chains: B,D,F,H,J,L,N,P
Fab 47e heavy chain protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9113
95 % 1 1 9338 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 1 1 9243
70 % 1821 2342 2
50 % 3776 4843 1
40 % 3776 4843 1
30 % 4465 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures