Sequence Similarity Clusters for the Entities in PDB 1RYP

Entity #1 | Chains: A,O
20S PROTEASOME protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 304 13
95 % 2 304 16 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 2 304 18
70 % 2 304 26
50 % 11 352 40
40 % 11 353 48
30 % 73 2495 3
Entity #10 | Chains: J,X
20S PROTEASOME protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 301 18
95 % 2 301 22 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 2 301 25
70 % 2 301 32
50 % 11 348 43
40 % 11 349 51
30 % 11 349 66
Entity #11 | Chains: K,Y
20S PROTEASOME protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 300 20
95 % 2 300 24 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 2 300 26
70 % 2 300 34
50 % 2 300 70
40 % 11 348 53
30 % 11 348 67
Entity #12 | Chains: L,Z
20S PROTEASOME protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 215 47
95 % 2 247 39 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 2 247 44
70 % 11 309 21
50 % 11 310 57
40 % 11 310 77
30 % 24 680 9
Entity #13 | Chains: 1,M
20S PROTEASOME protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 301 15
95 % 2 301 23 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 2 301 22
70 % 2 301 33
50 % 2 301 67
40 % 11 348 52
30 % 11 349 64
Entity #14 | Chains: 2,N
20S PROTEASOME protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 301 17
95 % 2 301 21 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 2 301 24
70 % 2 301 31
50 % 2 301 68
40 % 11 327 59
30 % 11 327 72
Entity #2 | Chains: B,P
20S PROTEASOME protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 304 12
95 % 2 304 19 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.2
PDBFlex
90 % 2 304 21
70 % 2 304 29
50 % 11 352 38
40 % 43 1436 2
30 % 74 2495 3
Entity #3 | Chains: C,Q
20S PROTEASOME protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 304 14
95 % 2 304 18 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.4
PDBFlex
90 % 2 304 20
70 % 2 304 28
50 % 11 352 37
40 % 44 1436 2
30 % 75 2495 3
Entity #4 | Chains: D,R
20S PROTEASOME protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 304 11
95 % 2 304 17 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 2 304 19
70 % 2 304 27
50 % 11 352 41
40 % 45 1436 2
30 % 76 2495 3
Entity #5 | Chains: E,S
20S PROTEASOME protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 304 10
95 % 2 305 14 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.2
PDBFlex
90 % 2 305 16
70 % 2 305 24
50 % 11 353 34
40 % 46 1436 2
30 % 77 2495 3
Entity #6 | Chains: F,T
20S PROTEASOME protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 302 19
95 % 2 304 15 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 2 304 17
70 % 2 304 25
50 % 11 352 39
40 % 11 352 49
30 % 78 2495 3
Entity #7 | Chains: G,U
20S PROTEASOME protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 45 446
95 % 1 45 568 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 45 595
70 % 1 45 633
50 % 11 352 30
40 % 11 352 41
30 % 79 2495 3
Entity #8 | Chains: H,V
20S PROTEASOME protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 301 16
95 % 2 301 20 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 2 301 23
70 % 2 301 30
50 % 11 327 46
40 % 11 327 58
30 % 25 680 9
Entity #9 | Chains: I,W
20S PROTEASOME protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 246 26
95 % 2 280 29 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 2 291 28
70 % 2 291 37
50 % 11 349 42
40 % 11 349 50
30 % 11 349 65

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1RYP 7 G, U 20S PROTEASOME 4932 3.4.25.1 | Details
2 4EU2 7 G, U Proteasome component C1 UNP RESIDUES 5-248 4932 3.4.25.1 | Details
3 3GPT 6 F, T Proteasome component C1 sequence database residues 5-248 4932 3.4.25.1 | Details
4 3HYE 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
5 3OEU 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
6 3GPW 6 F, T Proteasome component C1 sequence database residues 5-248 4932 3.4.25.1 | Details
7 3MG6 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
8 4LQI 6 F, T Proteasome subunit alpha type-7 4932 3.4.25.1 | Details
9 3MG8 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
10 1G65 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
11 3TDD 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
12 3SDI 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
13 1G0U 6 F, T PROTEASOME COMPONENT C1 PART OF 20S SUBUNIT 4932 3.4.25.1 | Details
14 4HNP 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
15 4HRD 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
16 4GK7 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
17 3SDK 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
18 3MG0 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
19 4HRC 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
20 3D29 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
21 4FZC 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
22 3DY3 6 F, T Proteasome component C1 UNP residues 5-248 4932 3.4.25.1 | Details
23 3MG7 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
24 2GPL 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
25 3OKJ 6 F, T Proteasome component C1 sequence database residues 5-248 4932 3.4.25.1 | Details
26 4V7O 7 AL, AX, BG, BU Proteasome component C1 4932 3.4.25.1 | Details
27 4FZG 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
28 3OEV 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
29 3DY4 6 F, T Proteasome component C1 UNP residues 5-248 4932 3.4.25.1 | Details
30 2FAK 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
31 2F16 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
32 3GPJ 6 F, T Proteasome component C1 sequence database residues 5-248 4932 3.4.25.1 | Details
33 3SHJ 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
34 3MG4 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
35 3E47 6 F, T Proteasome component C1 UNP residues 5-248 4932 3.4.25.1 | Details
36 1JD2 6 1, F PROTEASOME COMPONENT C1 part of 20S subunit 4932 3.4.25.1 | Details
37 6EF0 7 G Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details
38 6EF1 7 G Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details
39 6EF2 7 G Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details
40 6FVT 7 G, g Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details
41 6FVU 7 G, g Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details
42 6FVV 7 G, g Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details
43 6FVW 7 G, g Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details
44 6FVX 7 G, g Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details
45 6FVY 7 G, g Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details