Sequence Similarity Clusters for the Entities in PDB 1RYP

Entity #1 | Chains: A,O
20S PROTEASOME protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 304 13
95 % 2 304 16 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 2 304 18
70 % 2 304 26
50 % 11 352 40
40 % 11 353 48
30 % 73 2495 3
Entity #10 | Chains: J,X
20S PROTEASOME protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 301 18
95 % 2 301 22 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 2 301 25
70 % 2 301 32
50 % 11 348 43
40 % 11 349 51
30 % 11 349 68
Entity #11 | Chains: K,Y
20S PROTEASOME protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 300 20
95 % 2 300 24 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 2 300 26
70 % 2 300 34
50 % 2 300 70
40 % 11 348 53
30 % 11 348 69
Entity #12 | Chains: L,Z
20S PROTEASOME protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 215 47
95 % 2 247 40 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 2 247 45
70 % 11 309 21
50 % 11 310 59
40 % 11 310 77
30 % 24 680 9
Entity #13 | Chains: 1,M
20S PROTEASOME protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 301 15
95 % 2 301 23 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 2 301 22
70 % 2 301 33
50 % 2 301 67
40 % 11 348 52
30 % 11 349 66
Entity #14 | Chains: 2,N
20S PROTEASOME protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 301 17
95 % 2 301 21 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 2 301 24
70 % 2 301 31
50 % 2 301 68
40 % 11 327 60
30 % 11 327 74
Entity #2 | Chains: B,P
20S PROTEASOME protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 304 12
95 % 2 304 19 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.2
PDBFlex
90 % 2 304 21
70 % 2 304 29
50 % 11 352 38
40 % 43 1436 2
30 % 74 2495 3
Entity #3 | Chains: C,Q
20S PROTEASOME protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 304 14
95 % 2 304 18 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.4
PDBFlex
90 % 2 304 20
70 % 2 304 28
50 % 11 352 37
40 % 44 1436 2
30 % 75 2495 3
Entity #4 | Chains: D,R
20S PROTEASOME protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 304 11
95 % 2 304 17 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 2 304 19
70 % 2 304 27
50 % 11 352 41
40 % 45 1436 2
30 % 76 2495 3
Entity #5 | Chains: E,S
20S PROTEASOME protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 304 10
95 % 2 305 14 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.2
PDBFlex
90 % 2 305 16
70 % 2 305 24
50 % 11 353 35
40 % 46 1436 2
30 % 77 2495 3
Entity #6 | Chains: F,T
20S PROTEASOME protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 302 19
95 % 2 304 15 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 2 304 17
70 % 2 304 25
50 % 11 352 39
40 % 11 352 49
30 % 78 2495 3
Entity #7 | Chains: G,U
20S PROTEASOME protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 45 447
95 % 1 45 569 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 45 597
70 % 1 45 635
50 % 11 352 30
40 % 11 352 42
30 % 79 2495 3
Entity #8 | Chains: H,V
20S PROTEASOME protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 301 16
95 % 2 301 20 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 2 301 23
70 % 2 301 30
50 % 11 327 46
40 % 11 327 59
30 % 25 680 9
Entity #9 | Chains: I,W
20S PROTEASOME protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 246 26
95 % 2 280 29 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 2 291 28
70 % 2 291 37
50 % 11 349 42
40 % 11 349 50
30 % 11 349 67

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures