Sequence Similarity Clusters for the Entities in PDB 1RTD

Entity #1 | Chains: E,G
DNA TEMPLATE FOR REVERSE TRANSCRIPTASE dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F,H
DNA PRIMER FOR REVERSE TRANSCRIPTASE dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,C
PROTEIN (REVERSE TRANSCRIPTASE) protein, length: 554 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 29581
95 % 190 231 107
90 % 190 231 112
70 % 190 231 129
50 % 191 232 157
40 % 191 232 171
30 % 191 232 189
Entity #4 | Chains: B,D
PROTEIN (REVERSE TRANSCRIPTASE) protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 57 602
95 % 185 225 116
90 % 185 225 119
70 % 185 225 136
50 % 186 226 165
40 % 186 226 180
30 % 186 226 198

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.