Sequence Similarity Clusters for the Entities in PDB 1RTD

Entity #1 | Chains: E,G
DNA TEMPLATE FOR REVERSE TRANSCRIPTASE dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F,H
DNA PRIMER FOR REVERSE TRANSCRIPTASE dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,C
PROTEIN (REVERSE TRANSCRIPTASE) protein, length: 554 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31543
95 % 207 248 91 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 207 248 96
70 % 207 248 115
50 % 208 249 150
40 % 208 249 165
30 % 208 249 180
Entity #4 | Chains: B,D
PROTEIN (REVERSE TRANSCRIPTASE) protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 57 644
95 % 202 242 116 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 202 242 120
70 % 202 242 136
50 % 203 243 157
40 % 203 243 175
30 % 203 243 188

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.