Sequence Similarity Clusters for the Entities in PDB 1RTD

Entity #1 | Chains: E,G
DNA TEMPLATE FOR REVERSE TRANSCRIPTASE dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F,H
DNA PRIMER FOR REVERSE TRANSCRIPTASE dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,C
PROTEIN (REVERSE TRANSCRIPTASE) protein, length: 554 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 27782
95 % 183 224 104
90 % 183 224 109
70 % 183 224 123
50 % 184 225 150
40 % 184 225 168
30 % 184 225 183
Entity #4 | Chains: B,D
PROTEIN (REVERSE TRANSCRIPTASE) protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 57 501
95 % 178 218 109
90 % 178 218 114
70 % 178 218 131
50 % 179 219 156
40 % 179 219 173
30 % 179 219 189

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.