Sequence Similarity Clusters for the Entities in PDB 1RTD

Entity #1 | Chains: E,G
DNA TEMPLATE FOR REVERSE TRANSCRIPTASE dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F,H
DNA PRIMER FOR REVERSE TRANSCRIPTASE dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,C
PROTEIN (REVERSE TRANSCRIPTASE) protein, length: 554 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32664
95 % 215 257 110 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 215 257 114
70 % 215 257 128
50 % 216 258 156
40 % 217 259 167
30 % 217 259 177
Entity #4 | Chains: B,D
PROTEIN (REVERSE TRANSCRIPTASE) protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 57 673
95 % 210 251 118 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 210 251 122
70 % 210 251 137
50 % 212 253 164
40 % 212 253 175
30 % 212 253 186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures