Sequence Similarity Clusters for the Entities in PDB 1RTD

Entity #1 | Chains: E,G
DNA TEMPLATE FOR REVERSE TRANSCRIPTASE dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F,H
DNA PRIMER FOR REVERSE TRANSCRIPTASE dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,C
PROTEIN (REVERSE TRANSCRIPTASE) protein, length: 554 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30512
95 % 196 237 106 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 196 237 111
70 % 196 237 126
50 % 197 238 152
40 % 197 238 169
30 % 197 238 184
Entity #4 | Chains: B,D
PROTEIN (REVERSE TRANSCRIPTASE) protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 57 626
95 % 191 231 115 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.6
PDBFlex
90 % 191 231 118
70 % 191 231 136
50 % 192 232 164
40 % 192 232 180
30 % 192 232 193

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.