Sequence Similarity Clusters for the Entities in PDB 1RLB

Entity #1 | Chains: A,B,C,D
TRANSTHYRETIN protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 13 1411
95 % 285 291 10 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.8
PDBFlex
90 % 285 291 11
70 % 291 297 14
50 % 295 301 20
40 % 295 301 30
30 % 307 313 39
Entity #2 | Chains: E,F
RETINOL BINDING PROTEIN protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42536
95 % 13 13 4775 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 21 23 2228
70 % 22 24 2119
50 % 22 24 2108
40 % 22 24 2100
30 % 22 24 2021

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.