Sequence Similarity Clusters for the Entities in PDB 1RLB

Entity #1 | Chains: A,B,C,D
TRANSTHYRETIN protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 217 222 24
95 % 289 295 10 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.8
PDBFlex
90 % 289 295 12
70 % 295 301 16
50 % 299 305 22
40 % 299 305 36
30 % 311 317 48
Entity #2 | Chains: E,F
RETINOL BINDING PROTEIN protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30217
95 % 13 13 4783 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 29 31 1659
70 % 30 32 1599
50 % 30 32 1650
40 % 30 32 1637
30 % 30 32 1618

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures