Sequence Similarity Clusters for the Entities in PDB 1RLB

Entity #1 | Chains: A,B,C,D
TRANSTHYRETIN protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 13 1441
95 % 285 291 10 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.8
PDBFlex
90 % 285 291 11
70 % 291 297 14
50 % 295 301 20
40 % 295 301 32
30 % 307 313 42
Entity #2 | Chains: E,F
RETINOL BINDING PROTEIN protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43078
95 % 13 13 4856 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 21 23 2259
70 % 22 24 2153
50 % 22 24 2144
40 % 22 24 2134
30 % 22 24 2045

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures