Sequence Similarity Clusters for the Entities in PDB 1RLB

Entity #1 | Chains: A,B,C,D
TRANSTHYRETIN protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 13 1392
95 % 276 282 11 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.8
PDBFlex
90 % 276 282 12
70 % 282 288 15
50 % 286 292 20
40 % 286 292 29
30 % 298 304 40
Entity #2 | Chains: E,F
RETINOL BINDING PROTEIN protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41896
95 % 13 13 4686 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 21 23 2201
70 % 22 24 2098
50 % 22 24 2088
40 % 22 24 2076
30 % 22 24 2000

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.