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An Information Portal to 110790 Biological Macromolecular Structures

Crystal Structure of a new rexinoid bound to the RXRalpha ligand binding doamin in the RXRalpha/PPARgamma heterodimer
Sequence Clustering and Redundancy Reduction Results
1RDT
Sequence Clusters for the Sequence Entities in PDB 1RDT
Entity #1: Chains: A - Retinoic acid receptor RXR-alpha protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 45 262
95% 34 48 357
90% 34 48 377
70% 35 57 302
50% 35 57 332
40% 39 70 289
30% 445 658 12
Entity #2: Chains: B - LxxLL motif coactivator protein, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 14 1257
95% 11 14 1701
90% 11 14 1743
70% 11 14 1757
50% 11 14 1796
40% 11 14 1820
30% 11 14 1737
Entity #3: Chains: D - Peroxisome proliferator activated receptor gamma protein, length: 284 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 128 58
95% 87 136 81
90% 87 136 84
70% 87 136 104
50% 108 174 99
40% 108 174 121
30% 446 658 12
Entity #4: Chains: E - LxxLL motif coactivator protein, length: 23 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 61899
95% 1 1 43422
90% 1 1 41452
70% 1 1 36748
50% 1 1 31617
40% 1 1 27993
30% 1 1 23815
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.