Sequence Similarity Clusters for the Entities in PDB 1RDT

Entity #1 | Chains: A
Retinoic acid receptor RXR-alpha protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 50 261
95 % 37 53 348
90 % 37 53 370
70 % 38 62 307
50 % 38 62 330
40 % 42 75 287
30 % 478 702 12
Entity #2 | Chains: B
LxxLL motif coactivator protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 16 1160
95 % 11 16 1586
90 % 11 16 1623
70 % 11 16 1648
50 % 11 16 1691
40 % 11 16 1710
30 % 11 16 1629
Entity #3 | Chains: D
Peroxisome proliferator activated receptor gamma protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 133 73
95 % 91 141 101
90 % 91 141 106
70 % 91 141 122
50 % 112 179 105
40 % 112 179 127
30 % 479 702 12
Entity #4 | Chains: E
LxxLL motif coactivator protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64615
95 % 1 1 45213
90 % 1 1 43095
70 % 1 1 38137
50 % 1 1 32755
40 % 1 1 28992
30 % 1 1 24634

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.