Sequence Similarity Clusters for the Entities in PDB 1RDT

Entity #1 | Chains: A
Retinoic acid receptor RXR-alpha protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 51 261
95 % 38 54 351
90 % 39 55 371
70 % 40 69 287
50 % 40 69 320
40 % 44 82 281
30 % 548 787 11
Entity #2 | Chains: B
LxxLL motif coactivator protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 17 1098
95 % 12 17 1512
90 % 12 17 1542
70 % 12 17 1573
50 % 12 17 1618
40 % 12 17 1644
30 % 12 17 1587
Entity #3 | Chains: D
Peroxisome proliferator activated receptor gamma protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 134 88
95 % 92 142 108
90 % 92 142 113
70 % 92 142 129
50 % 113 180 112
40 % 113 180 134
30 % 549 787 11
Entity #4 | Chains: E
LxxLL motif coactivator protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66686
95 % 1 1 46625
90 % 1 1 44401
70 % 1 1 39210
50 % 1 1 33658
40 % 1 1 29759
30 % 1 1 25268

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.