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Crystal Structure of a new rexinoid bound to the RXRalpha ligand binding doamin in the RXRalpha/PPARgamma heterodimer
Sequence Clustering and Redundancy Reduction Results
1RDT
Sequence Clusters for the Sequence Entities in PDB 1RDT
Entity #1: Chains: A - Retinoic acid receptor RXR-alpha protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 45 257
95% 34 48 349
90% 34 48 368
70% 35 57 293
50% 35 57 325
40% 39 70 283
30% 439 651 12
Entity #2: Chains: B - LxxLL motif coactivator protein, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 14 1212
95% 11 14 1641
90% 11 14 1686
70% 11 14 1708
50% 11 14 1752
40% 11 14 1778
30% 11 14 1704
Entity #3: Chains: D - Peroxisome proliferator activated receptor gamma protein, length: 284 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 127 52
95% 85 134 78
90% 85 134 81
70% 85 134 98
50% 106 172 79
40% 106 172 105
30% 440 651 12
Entity #4: Chains: E - LxxLL motif coactivator protein, length: 23 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60481
95% 1 1 42460
90% 1 1 40555
70% 1 1 36002
50% 1 1 31007
40% 1 1 27456
30% 1 1 23373
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.