Sequence Similarity Clusters for the Entities in PDB 1RDT

Entity #1 | Chains: A
Retinoic acid receptor RXR-alpha protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 51 260
95 % 38 54 347
90 % 39 55 366
70 % 40 69 285
50 % 40 69 319
40 % 44 82 279
30 % 539 776 11
Entity #2 | Chains: B
LxxLL motif coactivator protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 17 1091
95 % 12 17 1505
90 % 12 17 1533
70 % 12 17 1566
50 % 12 17 1611
40 % 12 17 1638
30 % 12 17 1578
Entity #3 | Chains: D
Peroxisome proliferator activated receptor gamma protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 134 87
95 % 92 142 108
90 % 92 142 113
70 % 92 142 128
50 % 113 180 112
40 % 113 180 133
30 % 540 776 11
Entity #4 | Chains: E
LxxLL motif coactivator protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66350
95 % 1 1 46401
90 % 1 1 44188
70 % 1 1 39032
50 % 1 1 33503
40 % 1 1 29626
30 % 1 1 25155

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.