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An Information Portal to 106082 Biological Macromolecular Structures

Crystal Structure of a new rexinoid bound to the RXRalpha ligand binding doamin in the RXRalpha/PPARgamma heterodimer
Sequence Clustering and Redundancy Reduction Results
1RDT
Sequence Clusters for the Sequence Entities in PDB 1RDT
Entity #1: Chains: A - Retinoic acid receptor RXR-alpha protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 45 253
95% 34 48 340
90% 34 48 360
70% 35 57 272
50% 35 57 312
40% 39 70 279
30% 429 634 12
Entity #2: Chains: B - LxxLL motif coactivator protein, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 14 1185
95% 11 14 1610
90% 11 14 1652
70% 11 14 1674
50% 11 14 1715
40% 11 14 1747
30% 11 14 1678
Entity #3: Chains: D - Peroxisome proliferator activated receptor gamma protein, length: 284 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 123 41
95% 83 129 66
90% 83 129 70
70% 83 129 87
50% 104 167 78
40% 104 167 102
30% 430 634 12
Entity #4: Chains: E - LxxLL motif coactivator protein, length: 23 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59432
95% 1 1 41780
90% 1 1 39923
70% 1 1 35467
50% 1 1 30542
40% 1 1 27045
30% 1 1 23030
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.