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An Information Portal to 105025 Biological Macromolecular Structures

Crystal Structure of a new rexinoid bound to the RXRalpha ligand binding doamin in the RXRalpha/PPARgamma heterodimer
Sequence Clustering and Redundancy Reduction Results
1RDT
Sequence Clusters for the Sequence Entities in PDB 1RDT
Entity #1: Chains: A - Retinoic acid receptor RXR-alpha protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 45 251
95% 34 48 338
90% 34 48 357
70% 35 57 266
50% 35 57 305
40% 39 70 275
30% 419 623 12
Entity #2: Chains: B - LxxLL motif coactivator protein, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 14 1160
95% 11 14 1574
90% 11 14 1618
70% 11 14 1646
50% 11 14 1687
40% 11 14 1717
30% 11 14 1656
Entity #3: Chains: D - Peroxisome proliferator activated receptor gamma protein, length: 284 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 122 41
95% 82 128 67
90% 82 128 71
70% 82 128 85
50% 102 165 74
40% 102 165 100
30% 420 623 12
Entity #4: Chains: E - LxxLL motif coactivator protein, length: 23 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58546
95% 1 1 41200
90% 1 1 39379
70% 1 1 35002
50% 1 1 30170
40% 1 1 26717
30% 1 1 22754
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.