Sequence Similarity Clusters for the Entities in PDB 1RDT

Entity #1 | Chains: A
Retinoic acid receptor RXR-alpha protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 52 298
95 % 40 56 383
90 % 41 57 406
70 % 42 74 304
50 % 42 74 349
40 % 46 87 302
30 % 647 911 9
Entity #2 | Chains: B
LxxLL motif coactivator protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 18 1113
95 % 13 18 1537
90 % 13 18 1571
70 % 13 18 1604
50 % 13 18 1646
40 % 13 18 1660
30 % 13 18 1617
Entity #3 | Chains: D
Peroxisome proliferator activated receptor gamma protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 146 89
95 % 99 154 115
90 % 99 154 118
70 % 99 154 137
50 % 138 211 103
40 % 138 211 127
30 % 648 911 9
Entity #4 | Chains: E
LxxLL motif coactivator protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71518
95 % 1 1 49907
90 % 1 1 47425
70 % 1 1 41707
50 % 1 1 35742
40 % 1 1 31577
30 % 1 1 26825

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.