Sequence Similarity Clusters for the Entities in PDB 1RDT

Entity #1 | Chains: A
Retinoic acid receptor RXR-alpha protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 52 303
95 % 40 56 388 Flexibility: Medium
Max RMSD: 13.2, Avg RMSD: 4.3
PDBFlex
90 % 41 57 411
70 % 42 74 308
50 % 42 74 358
40 % 46 87 306
30 % 666 936 10
Entity #2 | Chains: B
LxxLL motif coactivator protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 18 1136
95 % 13 18 1554
90 % 13 18 1591
70 % 13 18 1619
50 % 13 18 1664
40 % 13 18 1673
30 % 13 18 1633
Entity #3 | Chains: D
Peroxisome proliferator activated receptor gamma protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 147 90
95 % 100 155 113
90 % 100 155 117
70 % 100 155 135
50 % 139 212 103
40 % 139 212 127
30 % 667 936 10
Entity #4 | Chains: E
LxxLL motif coactivator protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72387
95 % 1 1 50524
90 % 1 1 47992
70 % 1 1 42169
50 % 1 1 36107
40 % 1 1 31895
30 % 1 1 27086

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.