Sequence Similarity Clusters for the Entities in PDB 1RDT

Entity #1 | Chains: A
Retinoic acid receptor RXR-alpha protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 59 306
95 % 44 63 357 Flexibility: Medium
Max RMSD: 13.2, Avg RMSD: 4.4
PDBFlex
90 % 45 65 367
70 % 46 81 312
50 % 46 81 376
40 % 50 94 322
30 % 898 1261 8
Entity #2 | Chains: B
LxxLL motif coactivator protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 19 1386
95 % 13 19 1627
90 % 13 19 1661
70 % 13 19 1665
50 % 13 19 1704
40 % 13 19 1700
30 % 13 19 1665
Entity #3 | Chains: D
Peroxisome proliferator activated receptor gamma protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 97 146 109
95 % 112 169 119 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.6
PDBFlex
90 % 112 169 122
70 % 112 169 139
50 % 152 227 107
40 % 152 227 130
30 % 899 1261 8
Entity #4 | Chains: E
LxxLL motif coactivator protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59599
95 % 1 1 48697
90 % 1 1 46234
70 % 1 1 40539
50 % 1 1 34391
40 % 1 1 30118
30 % 1 1 25149

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures