Sequence Similarity Clusters for the Entities in PDB 1RDT

Entity #1 | Chains: A
Retinoic acid receptor RXR-alpha protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 51 297
95 % 38 54 390
90 % 39 55 414
70 % 40 72 307
50 % 40 72 350
40 % 44 85 300
30 % 639 900 9
Entity #2 | Chains: B
LxxLL motif coactivator protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 17 1212
95 % 12 17 1659
90 % 12 17 1692
70 % 12 17 1729
50 % 12 17 1758
40 % 12 17 1765
30 % 12 17 1701
Entity #3 | Chains: D
Peroxisome proliferator activated receptor gamma protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 145 88
95 % 98 153 111
90 % 98 153 116
70 % 98 153 134
50 % 137 210 102
40 % 137 210 126
30 % 640 900 9
Entity #4 | Chains: E
LxxLL motif coactivator protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70972
95 % 1 1 49540
90 % 1 1 47095
70 % 1 1 41444
50 % 1 1 35527
40 % 1 1 31392
30 % 1 1 26665

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.