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Crystal Structure of a new rexinoid bound to the RXRalpha ligand binding doamin in the RXRalpha/PPARgamma heterodimer
Sequence Clustering and Redundancy Reduction Results
1RDT
Sequence Clusters for the Sequence Entities in PDB 1RDT
Entity #1: Chains: A - Retinoic acid receptor RXR-alpha protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 45 249
95% 34 48 335
90% 34 48 352
70% 35 57 253
50% 35 57 302
40% 39 70 266
30% 417 621 12
Entity #2: Chains: B - LxxLL motif coactivator protein, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 14 1151
95% 11 14 1562
90% 11 14 1607
70% 11 14 1633
50% 11 14 1678
40% 11 14 1706
30% 11 14 1647
Entity #3: Chains: D - Peroxisome proliferator activated receptor gamma protein, length: 284 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 121 41
95% 81 127 66
90% 81 127 70
70% 81 127 84
50% 101 164 76
40% 101 164 102
30% 418 621 12
Entity #4: Chains: E - LxxLL motif coactivator protein, length: 23 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58153
95% 1 1 40931
90% 1 1 39138
70% 1 1 34806
50% 1 1 30005
40% 1 1 26564
30% 1 1 22612
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.