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Crystal Structure of a new rexinoid bound to the RXRalpha ligand binding doamin in the RXRalpha/PPARgamma heterodimer
Sequence Clustering and Redundancy Reduction Results
1RDT
Sequence Clusters for the Sequence Entities in PDB 1RDT
Entity #1: Chains: A - Retinoic acid receptor RXR-alpha protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 44 254
95% 33 47 336
90% 33 47 355
70% 34 56 254
50% 34 56 297
40% 38 69 263
30% 413 617 12
Entity #2: Chains: B - LxxLL motif coactivator protein, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 14 1070
95% 11 14 1475
90% 11 14 1524
70% 11 14 1555
50% 11 14 1629
40% 11 14 1665
30% 11 14 1613
Entity #3: Chains: D - Peroxisome proliferator activated receptor gamma protein, length: 284 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 119 41
95% 79 125 67
90% 79 125 71
70% 79 125 85
50% 99 162 76
40% 99 162 97
30% 414 617 12
Entity #4: Chains: E - LxxLL motif coactivator protein, length: 23 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57517
95% 1 1 40476
90% 1 1 38708
70% 1 1 34469
50% 1 1 29724
40% 1 1 26318
30% 1 1 22410
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.