Sequence Similarity Clusters for the Entities in PDB 1RDT

Entity #1 | Chains: A
Retinoic acid receptor RXR-alpha protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 59 256
95 % 44 63 339 Flexibility: Medium
Max RMSD: 13.2, Avg RMSD: 4.4
PDBFlex
90 % 45 65 353
70 % 46 81 287
50 % 46 81 322
40 % 50 94 283
30 % 711 989 10
Entity #2 | Chains: B
LxxLL motif coactivator protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 19 1142
95 % 13 19 1543
90 % 13 19 1575
70 % 13 19 1574
50 % 13 19 1614
40 % 13 19 1633
30 % 13 19 1603
Entity #3 | Chains: D
Peroxisome proliferator activated receptor gamma protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 98 152 88
95 % 105 160 116 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.7
PDBFlex
90 % 105 160 120
70 % 105 160 136
50 % 144 217 105
40 % 144 217 131
30 % 712 989 10
Entity #4 | Chains: E
LxxLL motif coactivator protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74928
95 % 1 1 52357
90 % 1 1 49673
70 % 1 1 43489
50 % 1 1 37135
40 % 1 1 32785
30 % 1 1 27859

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.