Sequence Similarity Clusters for the Entities in PDB 1RDT

Entity #1 | Chains: A
Retinoic acid receptor RXR-alpha protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 59 267
95 % 44 63 346 Flexibility: Medium
Max RMSD: 13.2, Avg RMSD: 4.4
PDBFlex
90 % 45 65 359
70 % 46 81 302
50 % 46 81 350
40 % 50 94 292
30 % 722 1006 10
Entity #2 | Chains: B
LxxLL motif coactivator protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 19 1174
95 % 13 19 1578
90 % 13 19 1614
70 % 13 19 1613
50 % 13 19 1656
40 % 13 19 1677
30 % 13 19 1648
Entity #3 | Chains: D
Peroxisome proliferator activated receptor gamma protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 104 160 85
95 % 111 168 114 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.7
PDBFlex
90 % 111 168 118
70 % 111 168 133
50 % 150 225 103
40 % 150 225 127
30 % 723 1006 10
Entity #4 | Chains: E
LxxLL motif coactivator protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76394
95 % 1 1 53289
90 % 1 1 50508
70 % 1 1 44191
50 % 1 1 37713
40 % 1 1 33280
30 % 1 1 28268

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures