Sequence Similarity Clusters for the Entities in PDB 1RDT

Entity #1 | Chains: A
Retinoic acid receptor RXR-alpha protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 53 294
95 % 40 57 377
90 % 41 58 398
70 % 42 75 308
50 % 42 75 370
40 % 46 88 305
30 % 706 982 10
Entity #2 | Chains: B
LxxLL motif coactivator protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 18 1186
95 % 13 18 1609
90 % 13 18 1648
70 % 13 18 1665
50 % 13 18 1701
40 % 13 18 1707
30 % 13 18 1670
Entity #3 | Chains: D
Peroxisome proliferator activated receptor gamma protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 152 88
95 % 105 160 115
90 % 105 160 119
70 % 105 160 135
50 % 144 217 103
40 % 144 217 128
30 % 707 982 10
Entity #4 | Chains: E
LxxLL motif coactivator protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73961
95 % 1 1 51675
90 % 1 1 49047
70 % 1 1 43015
50 % 1 1 36760
40 % 1 1 32450
30 % 1 1 27562

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.