Sequence Similarity Clusters for the Entities in PDB 1RDT

Entity #1 | Chains: A
Retinoic acid receptor RXR-alpha protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 51 261
95 % 38 54 355
90 % 39 55 378
70 % 40 70 296
50 % 40 70 324
40 % 44 83 283
30 % 557 800 11
Entity #2 | Chains: B
LxxLL motif coactivator protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 17 1106
95 % 12 17 1524
90 % 12 17 1554
70 % 12 17 1586
50 % 12 17 1631
40 % 12 17 1654
30 % 12 17 1600
Entity #3 | Chains: D
Peroxisome proliferator activated receptor gamma protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 137 84
95 % 94 145 107
90 % 94 145 112
70 % 94 145 126
50 % 115 184 111
40 % 115 184 133
30 % 558 800 11
Entity #4 | Chains: E
LxxLL motif coactivator protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67296
95 % 1 1 47043
90 % 1 1 44784
70 % 1 1 39512
50 % 1 1 33907
40 % 1 1 29965
30 % 1 1 25457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.