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An Information Portal to 105339 Biological Macromolecular Structures

Crystal Structure of a new rexinoid bound to the RXRalpha ligand binding doamin in the RXRalpha/PPARgamma heterodimer
Sequence Clustering and Redundancy Reduction Results
1RDT
Sequence Clusters for the Sequence Entities in PDB 1RDT
Entity #1: Chains: A - Retinoic acid receptor RXR-alpha protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 45 253
95% 34 48 339
90% 34 48 359
70% 35 57 280
50% 35 57 313
40% 39 70 278
30% 421 625 12
Entity #2: Chains: B - LxxLL motif coactivator protein, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 14 1173
95% 11 14 1593
90% 11 14 1638
70% 11 14 1665
50% 11 14 1704
40% 11 14 1735
30% 11 14 1667
Entity #3: Chains: D - Peroxisome proliferator activated receptor gamma protein, length: 284 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 123 41
95% 83 129 66
90% 83 129 70
70% 83 129 86
50% 104 167 76
40% 104 167 100
30% 422 625 12
Entity #4: Chains: E - LxxLL motif coactivator protein, length: 23 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59035
95% 1 1 41520
90% 1 1 39678
70% 1 1 35257
50% 1 1 30380
40% 1 1 26903
30% 1 1 22912
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.