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An Information Portal to 109093 Biological Macromolecular Structures

Crystal Structure of a new rexinoid bound to the RXRalpha ligand binding doamin in the RXRalpha/PPARgamma heterodimer
Sequence Clustering and Redundancy Reduction Results
1RDT
Sequence Clusters for the Sequence Entities in PDB 1RDT
Entity #1: Chains: A - Retinoic acid receptor RXR-alpha protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 45 258
95% 34 48 353
90% 34 48 374
70% 35 57 295
50% 35 57 326
40% 39 70 283
30% 441 653 12
Entity #2: Chains: B - LxxLL motif coactivator protein, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 14 1225
95% 11 14 1655
90% 11 14 1699
70% 11 14 1719
50% 11 14 1762
40% 11 14 1792
30% 11 14 1712
Entity #3: Chains: D - Peroxisome proliferator activated receptor gamma protein, length: 284 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 127 53
95% 85 134 79
90% 85 134 83
70% 85 134 99
50% 106 172 81
40% 106 172 108
30% 442 653 12
Entity #4: Chains: E - LxxLL motif coactivator protein, length: 23 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 61009
95% 1 1 42845
90% 1 1 40902
70% 1 1 36282
50% 1 1 31228
40% 1 1 27643
30% 1 1 23524
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.