Sequence Similarity Clusters for the Entities in PDB 1RDT

Entity #1 | Chains: A
Retinoic acid receptor RXR-alpha protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 51 260
95 % 38 54 347
90 % 39 55 366
70 % 40 69 283
50 % 40 69 315
40 % 44 82 278
30 % 538 775 11
Entity #2 | Chains: B
LxxLL motif coactivator protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 17 1083
95 % 12 17 1496
90 % 12 17 1525
70 % 12 17 1556
50 % 12 17 1597
40 % 12 17 1624
30 % 12 17 1567
Entity #3 | Chains: D
Peroxisome proliferator activated receptor gamma protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 134 86
95 % 92 142 108
90 % 92 142 113
70 % 92 142 128
50 % 113 180 111
40 % 113 180 133
30 % 539 775 11
Entity #4 | Chains: E
LxxLL motif coactivator protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65964
95 % 1 1 46130
90 % 1 1 43958
70 % 1 1 38855
50 % 1 1 33354
40 % 1 1 29494
30 % 1 1 25047

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.