Sequence Similarity Clusters for the Entities in PDB 1RDT

Entity #1 | Chains: A
Retinoic acid receptor RXR-alpha protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 51 262
95 % 38 54 357
90 % 39 55 379
70 % 40 70 297
50 % 40 70 326
40 % 44 83 283
30 % 562 806 11
Entity #2 | Chains: B
LxxLL motif coactivator protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 17 1119
95 % 12 17 1545
90 % 12 17 1575
70 % 12 17 1609
50 % 12 17 1643
40 % 12 17 1663
30 % 12 17 1613
Entity #3 | Chains: D
Peroxisome proliferator activated receptor gamma protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 137 86
95 % 94 145 109
90 % 94 145 114
70 % 94 145 129
50 % 115 184 113
40 % 115 184 134
30 % 563 806 11
Entity #4 | Chains: E
LxxLL motif coactivator protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67701
95 % 1 1 47324
90 % 1 1 45050
70 % 1 1 39726
50 % 1 1 34078
40 % 1 1 30109
30 % 1 1 25571

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.