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RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE
Sequence Clustering and Redundancy Reduction Results
1R9T
Sequence Clusters for the Sequence Entities in PDB 1R9T
Entity #1: Chains: R - RNA strand rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 97 202
95% 51 97 286
90% 51 97 299
70% 51 97 315
50% 51 98 337
40% 51 98 360
30% 51 98 373
Entity #11: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 102 182
95% 55 102 261
90% 55 102 272
70% 55 103 280
50% 55 103 311
40% 56 111 295
30% 56 111 312
Entity #12: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 98 200
95% 51 98 283
90% 51 98 296
70% 51 98 312
50% 51 98 349
40% 51 99 358
30% 51 99 369
Entity #13: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 101 186
95% 55 101 268
90% 55 101 279
70% 55 101 296
50% 55 101 328
40% 55 101 352
30% 55 101 363
Entity #2: Chains: T - DNA template strand dna, length: 28 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: N - DNA nontemplate strand dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 96 203
95% 51 96 287
90% 51 96 300
70% 51 96 316
50% 51 97 340
40% 51 97 363
30% 51 97 377
Entity #5: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 97 201
95% 51 98 280
90% 51 98 293
70% 51 98 310
50% 51 99 333
40% 52 107 302
30% 52 107 319
Entity #6: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 96 205
95% 51 96 288
90% 51 96 301
70% 51 96 318
50% 51 97 343
40% 51 97 365
30% 51 97 379
Entity #7: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 103 177
95% 56 103 251
90% 56 103 262
70% 56 103 287
50% 56 104 301
40% 56 104 328
30% 56 104 339
Entity #8: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 100 188
95% 55 100 272
90% 55 100 283
70% 55 100 302
50% 55 102 316
40% 55 102 339
30% 55 102 351
Entity #9: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 102 181
95% 55 103 252
90% 55 103 264
70% 55 103 288
50% 55 103 317
40% 55 103 340
30% 55 105 336
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.