Sequence Similarity Clusters for the Entities in PDB 1R9T

Entity #1 | Chains: R
RNA strand rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 115 211
95 % 56 115 301
90 % 56 115 315
70 % 56 115 354
50 % 56 116 403
40 % 56 116 438
30 % 56 119 426
Entity #11 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 131 174
95 % 60 131 238
90 % 60 131 248
70 % 60 141 264
50 % 61 149 259
40 % 61 149 282
30 % 61 149 290
Entity #12 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 116 209
95 % 56 116 297
90 % 56 116 311
70 % 56 116 349
50 % 56 116 406
40 % 56 117 429
30 % 56 117 430
Entity #13 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 127 180
95 % 58 127 248
90 % 58 127 256
70 % 58 127 291
50 % 58 127 326
40 % 58 127 357
30 % 58 127 361
Entity #2 | Chains: T
DNA template strand dna, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: N
DNA nontemplate strand dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 114 213
95 % 56 114 302
90 % 56 114 317
70 % 56 114 356
50 % 56 124 368
40 % 56 124 398
30 % 56 124 399
Entity #5 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 115 210
95 % 56 116 291
90 % 56 116 304
70 % 56 116 344
50 % 56 126 358
40 % 57 134 326
30 % 57 137 329
Entity #6 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 111 215
95 % 54 111 309
90 % 54 111 325
70 % 54 111 365
50 % 54 112 418
40 % 54 112 457
30 % 54 112 449
Entity #7 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 132 171
95 % 61 132 233
90 % 61 132 244
70 % 61 132 280
50 % 61 133 305
40 % 61 142 305
30 % 61 142 317
Entity #8 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 126 181
95 % 58 126 251
90 % 58 126 259
70 % 58 126 294
50 % 58 137 300
40 % 58 137 319
30 % 58 137 333
Entity #9 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 131 173
95 % 60 132 236
90 % 60 132 247
70 % 60 132 281
50 % 60 132 314
40 % 60 132 335
30 % 60 143 315

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.