Sequence Similarity Clusters for the Entities in PDB 1R9T

Entity #1 | Chains: R
RNA strand rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 110 203
95 % 54 110 284
90 % 54 110 297
70 % 54 110 320
50 % 54 111 333
40 % 54 111 365
30 % 54 114 365
Entity #11 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 119 161
95 % 58 119 223
90 % 58 119 234
70 % 58 121 256
50 % 59 129 257
40 % 59 129 277
30 % 59 129 295
Entity #12 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 111 198
95 % 54 111 281
90 % 54 111 294
70 % 54 111 317
50 % 54 111 341
40 % 54 112 362
30 % 54 112 370
Entity #13 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 117 165
95 % 58 117 233
90 % 58 117 243
70 % 58 117 272
50 % 58 117 308
40 % 58 117 335
30 % 58 117 345
Entity #2 | Chains: T
DNA template strand dna, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: N
DNA nontemplate strand dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 109 204
95 % 54 109 285
90 % 54 109 298
70 % 54 109 321
50 % 54 111 331
40 % 54 111 363
30 % 54 111 372
Entity #5 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 110 200
95 % 54 111 279
90 % 54 111 292
70 % 54 111 314
50 % 54 113 328
40 % 55 121 314
30 % 55 124 320
Entity #6 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 108 207
95 % 54 108 289
90 % 54 108 302
70 % 54 108 323
50 % 54 109 342
40 % 54 109 373
30 % 54 109 378
Entity #7 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 120 158
95 % 59 120 218
90 % 59 120 229
70 % 59 120 262
50 % 59 121 293
40 % 59 122 313
30 % 59 122 327
Entity #8 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 116 167
95 % 58 116 236
90 % 58 116 245
70 % 58 116 275
50 % 58 119 298
40 % 58 119 325
30 % 58 119 334
Entity #9 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 119 160
95 % 58 120 220
90 % 58 120 231
70 % 58 120 264
50 % 58 120 299
40 % 58 120 326
30 % 58 123 324

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.