Sequence Similarity Clusters for the Entities in PDB 1R9T

Entity #1 | Chains: R
RNA strand rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 110 205
95 % 54 110 293
90 % 54 110 305
70 % 54 110 327
50 % 54 111 341
40 % 54 111 376
30 % 54 114 370
Entity #11 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 119 162
95 % 58 119 230
90 % 58 119 240
70 % 58 121 266
50 % 59 129 265
40 % 59 129 288
30 % 59 129 305
Entity #12 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 111 201
95 % 54 111 290
90 % 54 111 302
70 % 54 111 323
50 % 54 111 348
40 % 54 112 372
30 % 54 112 375
Entity #13 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 117 172
95 % 58 117 245
90 % 58 117 254
70 % 58 117 287
50 % 58 117 318
40 % 58 117 344
30 % 58 117 352
Entity #2 | Chains: T
DNA template strand dna, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: N
DNA nontemplate strand dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 109 206
95 % 54 109 294
90 % 54 109 306
70 % 54 109 328
50 % 54 111 338
40 % 54 111 373
30 % 54 111 377
Entity #5 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 110 203
95 % 54 111 287
90 % 54 111 300
70 % 54 111 321
50 % 54 113 335
40 % 55 121 321
30 % 55 124 328
Entity #6 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 108 208
95 % 54 108 296
90 % 54 108 310
70 % 54 108 331
50 % 54 109 350
40 % 54 109 381
30 % 54 109 383
Entity #7 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 120 159
95 % 59 120 224
90 % 59 120 235
70 % 59 120 271
50 % 59 121 302
40 % 59 122 320
30 % 59 122 335
Entity #8 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 116 176
95 % 58 116 248
90 % 58 116 257
70 % 58 116 291
50 % 58 119 306
40 % 58 119 332
30 % 58 119 342
Entity #9 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 119 161
95 % 58 120 226
90 % 58 120 237
70 % 58 120 273
50 % 58 120 307
40 % 58 120 333
30 % 58 123 332

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.