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RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE
Sequence Clustering and Redundancy Reduction Results
1R9T
Sequence Clusters for the Sequence Entities in PDB 1R9T
Entity #1: Chains: R - RNA strand rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 97 202
95% 51 97 287
90% 51 97 302
70% 51 97 319
50% 51 98 343
40% 51 98 364
30% 51 98 378
Entity #11: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 102 186
95% 55 102 265
90% 55 102 277
70% 55 103 286
50% 56 112 272
40% 56 112 301
30% 56 112 317
Entity #12: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 98 200
95% 51 98 284
90% 51 98 299
70% 51 98 315
50% 51 98 354
40% 51 99 362
30% 51 99 374
Entity #13: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 101 188
95% 55 101 270
90% 55 101 282
70% 55 101 300
50% 55 101 335
40% 55 101 357
30% 55 101 370
Entity #2: Chains: T - DNA template strand dna, length: 28 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: N - DNA nontemplate strand dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 96 203
95% 51 96 288
90% 51 96 303
70% 51 96 321
50% 51 97 345
40% 51 97 366
30% 51 97 381
Entity #5: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 97 201
95% 51 98 281
90% 51 98 296
70% 51 98 313
50% 51 99 339
40% 52 108 308
30% 52 108 326
Entity #6: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 96 205
95% 51 96 289
90% 51 96 304
70% 51 96 322
50% 51 97 348
40% 51 97 368
30% 51 97 383
Entity #7: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 103 180
95% 56 103 254
90% 56 103 266
70% 56 103 291
50% 56 104 309
40% 56 104 336
30% 56 104 348
Entity #8: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 100 190
95% 55 100 274
90% 55 100 286
70% 55 100 306
50% 55 102 325
40% 55 102 347
30% 55 102 360
Entity #9: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 102 185
95% 55 103 255
90% 55 103 268
70% 55 103 292
50% 55 103 326
40% 55 103 348
30% 55 105 344
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.