Sequence Similarity Clusters for the Entities in PDB 1R9T

Entity #1 | Chains: R
RNA strand rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 116 221
95 % 56 116 309
90 % 56 116 325
70 % 56 119 339
50 % 56 121 390
40 % 56 121 417
30 % 56 124 411
Entity #11 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 137 178
95 % 60 137 235
90 % 60 137 249
70 % 60 151 255
50 % 61 159 246
40 % 61 159 267
30 % 61 159 275
Entity #12 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 117 217
95 % 56 117 304
90 % 56 117 320
70 % 56 117 357
50 % 56 120 398
40 % 56 122 412
30 % 56 122 418
Entity #13 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 133 180
95 % 58 133 245
90 % 58 133 257
70 % 58 133 288
50 % 58 136 313
40 % 58 136 328
30 % 58 136 340
Entity #2 | Chains: T
DNA template strand dna, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: N
DNA nontemplate strand dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 115 222
95 % 56 115 310
90 % 56 115 326
70 % 56 118 342
50 % 56 129 341
40 % 56 129 370
30 % 56 129 378
Entity #5 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 116 220
95 % 56 117 300
90 % 56 117 315
70 % 56 122 324
50 % 56 131 336
40 % 57 139 317
30 % 57 142 326
Entity #6 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 112 226
95 % 54 112 314
90 % 54 112 333
70 % 54 112 371
50 % 54 114 419
40 % 54 114 456
30 % 54 114 453
Entity #7 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 138 174
95 % 61 138 231
90 % 61 138 243
70 % 61 141 274
50 % 61 143 294
40 % 61 152 295
30 % 61 152 307
Entity #8 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 132 183
95 % 58 132 249
90 % 58 132 261
70 % 58 132 289
50 % 58 147 286
40 % 58 147 304
30 % 58 147 318
Entity #9 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 137 177
95 % 60 138 232
90 % 60 138 244
70 % 60 138 279
50 % 60 141 301
40 % 60 141 315
30 % 60 153 304

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.