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An Information Portal to 111749 Biological Macromolecular Structures

RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDE
Sequence Clustering and Redundancy Reduction Results
1R9S
Sequence Clusters for the Sequence Entities in PDB 1R9S
Entity #1: Chains: R - RNA strand rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 114 184
95% 105 114 252
90% 105 114 262
70% 106 115 273
50% 114 123 270
40% 114 123 296
30% 114 123 311
Entity #11: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 110 194
95% 101 110 271
90% 101 110 284
70% 101 110 305
50% 101 110 334
40% 102 111 354
30% 102 111 363
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 113 187
95% 105 113 254
90% 105 113 265
70% 105 113 291
50% 105 113 318
40% 105 113 350
30% 105 113 357
Entity #2: Chains: T - DNA strand dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 108 198
95% 101 108 274
90% 101 108 288
70% 101 108 310
50% 102 109 330
40% 102 109 360
30% 102 109 366
Entity #4: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 109 195
95% 101 110 267
90% 101 110 280
70% 101 110 302
50% 102 111 321
40% 110 119 308
30% 110 119 319
Entity #5: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 108 200
95% 101 108 277
90% 101 108 291
70% 101 108 311
50% 102 109 331
40% 102 109 364
30% 102 109 368
Entity #6: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 115 171
95% 106 115 240
90% 106 115 250
70% 106 115 279
50% 107 116 305
40% 107 116 335
30% 107 116 342
Entity #7: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 112 188
95% 105 112 256
90% 105 112 268
70% 105 112 294
50% 106 114 313
40% 106 114 341
30% 106 114 351
Entity #8: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 114 180
95% 105 115 242
90% 105 115 252
70% 105 115 282
50% 105 115 314
40% 105 115 342
30% 106 117 336
Entity #9: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 109 196
95% 100 109 273
90% 100 109 287
70% 100 109 309
50% 101 110 329
40% 101 110 359
30% 101 110 365
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.