Sequence Similarity Clusters for the Entities in PDB 1R9S

Entity #1 | Chains: R
RNA strand rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 123 159
95 % 108 123 224
90 % 108 123 235
70 % 109 133 215
50 % 117 141 243
40 % 117 141 268
30 % 117 141 283
Entity #11 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 115 200
95 % 103 115 282
90 % 103 115 295
70 % 103 115 321
50 % 103 115 345
40 % 104 116 364
30 % 104 116 375
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 119 166
95 % 106 119 236
90 % 106 119 245
70 % 106 119 282
50 % 106 119 315
40 % 106 119 341
30 % 106 119 352
Entity #2 | Chains: T
DNA strand dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 113 203
95 % 103 113 285
90 % 103 113 299
70 % 103 113 323
50 % 104 123 316
40 % 104 123 342
30 % 104 123 353
Entity #4 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 114 201
95 % 103 115 278
90 % 103 115 291
70 % 103 115 317
50 % 104 125 308
40 % 112 133 294
30 % 112 136 302
Entity #5 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 110 207
95 % 101 110 294
90 % 101 110 309
70 % 101 110 330
50 % 102 111 349
40 % 102 111 380
30 % 102 111 388
Entity #6 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 124 152
95 % 109 124 214
90 % 109 124 226
70 % 109 124 258
50 % 110 125 294
40 % 110 134 293
30 % 110 134 314
Entity #7 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 118 168
95 % 106 118 241
90 % 106 118 251
70 % 106 118 286
50 % 107 129 280
40 % 107 129 308
30 % 107 129 328
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 123 158
95 % 108 124 218
90 % 108 124 229
70 % 108 124 262
50 % 108 124 305
40 % 108 124 326
30 % 109 135 308
Entity #9 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 114 202
95 % 102 114 284
90 % 102 114 298
70 % 102 114 322
50 % 103 115 341
40 % 103 115 368
30 % 103 118 371

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.