Sequence Similarity Clusters for the Entities in PDB 1R9S

Entity #1 | Chains: R
RNA strand rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 142 175
95 % 109 142 236
90 % 109 142 250
70 % 112 159 250
50 % 120 167 246
40 % 120 167 264
30 % 120 167 270
Entity #11 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 117 224
95 % 104 117 315
90 % 104 117 333
70 % 104 117 369
50 % 106 122 416
40 % 107 124 434
30 % 107 124 435
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 138 183
95 % 107 138 244
90 % 107 138 259
70 % 107 138 289
50 % 109 143 313
40 % 109 143 328
30 % 109 143 336
Entity #2 | Chains: T
DNA strand dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 115 229
95 % 104 115 321
90 % 104 115 339
70 % 106 120 356
50 % 107 132 368
40 % 107 132 393
30 % 107 132 397
Entity #4 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 116 226
95 % 104 117 313
90 % 104 117 329
70 % 107 124 339
50 % 107 134 357
40 % 115 142 324
30 % 115 145 330
Entity #5 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 112 232
95 % 102 112 326
90 % 102 112 345
70 % 102 112 378
50 % 103 114 439
40 % 103 114 470
30 % 103 114 471
Entity #6 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 143 172
95 % 110 143 233
90 % 110 143 248
70 % 112 148 271
50 % 113 150 291
40 % 113 160 284
30 % 113 160 293
Entity #7 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 137 185
95 % 107 137 247
90 % 107 137 262
70 % 107 137 294
50 % 110 155 279
40 % 110 155 298
30 % 110 155 307
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 142 174
95 % 109 143 234
90 % 109 143 249
70 % 109 143 280
50 % 111 148 296
40 % 111 148 311
30 % 112 161 292
Entity #9 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 116 228
95 % 103 116 320
90 % 103 116 338
70 % 105 121 355
50 % 106 123 406
40 % 106 123 436
30 % 106 126 425

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.