Sequence Similarity Clusters for the Entities in PDB 1R9F

Entity #1 | Chains: B
5'-R(*CP*GP*UP*AP*CP*GP*CP*GP*GP*AP*AP*UP*AP*CP*UP*UP*CP*GP*AP*UP*U)-3' rna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-R(*UP*CP*GP*AP*AP*GP*UP*AP*UP*UP*CP*CP*GP*CP*GP*UP*AP*CP*GP*UP*U)-3' rna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Core protein P19 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 25512
95 % 4 9 5636
90 % 4 9 5632
70 % 4 9 5518
50 % 4 9 5194
40 % 4 9 4880
30 % 4 9 4412

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4J39 1 A RNA silencing suppressor p19 UNP residues 27-149 12145
2 4KNQ 2 A RNA silencing suppressor p19 UNP residues 27-149 12145
3 4JGN 1 A RNA silencing suppressor p19 UNP residues 27-149 12145
4 1R9F 3 A Core protein P19 Residues 27-158 12145
5 4KTG 1 A RNA silencing suppressor p19 UNP residues 27-158 12145
6 4JNX 1 A, D RNA silencing suppressor p19 UNP residues 27-149 12145
7 4KQ0 1 A, D RNA silencing suppressor p19 UNP residues 27-158 12145
8 4J5V 1 A RNA silencing suppressor p19 UNP residues 27-149 12145
9 4JK0 1 D RNA silencing suppressor p19 UNP residues 27-149 12145