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Crystal structure of p19 complexed with 19-bp small interfering RNA
Sequence Clustering and Redundancy Reduction Results
1R9F
Cluster # 4659 Members. Sequence cutoff: 70% Cluster size: 9 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4J39 1 A RNA silencing suppressor p19 UNP residues 27-149 12145  
2 4KNQ 2 A RNA silencing suppressor p19 UNP residues 27-149 12145  
3 4JGN 1 A RNA silencing suppressor p19 UNP residues 27-149 12145  
4 1R9F 3 A Core protein P19 Residues 27-158 12145  
5 4KTG 1 A RNA silencing suppressor p19 UNP residues 27-158 12145  
6 4JNX 1 A, D RNA silencing suppressor p19 UNP residues 27-149 12145  
7 4KQ0 1 A, D RNA silencing suppressor p19 UNP residues 27-158 12145  
8 4J5V 1 A RNA silencing suppressor p19 UNP residues 27-149 12145  
9 4JK0 1 D RNA silencing suppressor p19 UNP residues 27-149 12145  
 
Sequence Clusters for the Sequence Entities in PDB 1R9F
Entity #1: Chains: B - 5'-R(*CP*GP*UP*AP*CP*GP*CP*GP*GP*AP*AP*UP*AP*CP*UP*UP*CP*GP*AP*UP*U)-3' rna, length: 21 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: C - 5'-R(*UP*CP*GP*AP*AP*GP*UP*AP*UP*UP*CP*CP*GP*CP*GP*UP*AP*CP*GP*UP*U)-3' rna, length: 21 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - Core protein P19 protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21548
95% 4 9 4705
90% 4 9 4729
70% 4 9 4659
50% 4 9 4466
40% 4 9 4198
30% 4 9 3813
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.