Sequence Similarity Clusters for the Entities in PDB 1R9F

Entity #1 | Chains: B
5'-R(*CP*GP*UP*AP*CP*GP*CP*GP*GP*AP*AP*UP*AP*CP*UP*UP*CP*GP*AP*UP*U)-3' rna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-R(*UP*CP*GP*AP*AP*GP*UP*AP*UP*UP*CP*CP*GP*CP*GP*UP*AP*CP*GP*UP*U)-3' rna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Core protein P19 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 30009
95 % 4 9 6701 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 4 9 6696
70 % 4 9 6523
50 % 4 9 6088
40 % 4 9 5698
30 % 4 9 5115

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4J39 1 A RNA silencing suppressor p19 UNP residues 27-149 12145
2 4KNQ 2 A RNA silencing suppressor p19 UNP residues 27-149 12145
3 4JGN 1 A RNA silencing suppressor p19 UNP residues 27-149 12145
4 1R9F 3 A Core protein P19 Residues 27-158 12145
5 4KTG 1 A RNA silencing suppressor p19 UNP residues 27-158 12145
6 4JNX 1 A, D RNA silencing suppressor p19 UNP residues 27-149 12145
7 4KQ0 1 A, D RNA silencing suppressor p19 UNP residues 27-158 12145
8 4J5V 1 A RNA silencing suppressor p19 UNP residues 27-149 12145
9 4JK0 1 D RNA silencing suppressor p19 UNP residues 27-149 12145