Sequence Similarity Clusters for the Entities in PDB 1R5U

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 113 205
95 % 104 113 287
90 % 104 113 301
70 % 104 113 324
50 % 105 123 322
40 % 105 123 349
30 % 105 123 358
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 119 184
95 % 107 119 251
90 % 107 119 260
70 % 107 119 296
50 % 107 119 321
40 % 107 119 348
30 % 107 119 357
Entity #11 | Chains: M
TRANSCRIPTION FACTOR II B (TFIIB) protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 114 202
95 % 104 115 280
90 % 104 115 293
70 % 104 115 318
50 % 105 125 315
40 % 113 133 298
30 % 113 136 304
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 110 209
95 % 102 110 295
90 % 102 110 310
70 % 102 110 331
50 % 103 111 354
40 % 103 111 385
30 % 103 111 391
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 124 168
95 % 110 124 235
90 % 110 124 246
70 % 110 124 276
50 % 111 125 303
40 % 111 134 296
30 % 111 134 317
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 118 187
95 % 107 118 256
90 % 107 118 266
70 % 107 118 300
50 % 108 129 290
40 % 108 129 314
30 % 108 129 331
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 123 172
95 % 109 124 239
90 % 109 124 249
70 % 109 124 280
50 % 109 124 313
40 % 109 124 333
30 % 110 135 310
Entity #7 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 114 204
95 % 103 114 286
90 % 103 114 300
70 % 103 114 323
50 % 104 115 342
40 % 104 115 371
30 % 104 118 374
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 123 174
95 % 109 123 244
90 % 109 123 254
70 % 110 133 242
50 % 118 141 247
40 % 118 141 271
30 % 118 141 286
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 115 201
95 % 104 115 284
90 % 104 115 297
70 % 104 115 322
50 % 104 115 348
40 % 105 116 367
30 % 105 116 377

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.