Sequence Similarity Clusters for the Entities in PDB 1R5U

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 113 203
95 % 104 113 285
90 % 104 113 299
70 % 104 113 323
50 % 105 123 315
40 % 105 123 343
30 % 105 123 353
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 119 165
95 % 107 119 235
90 % 107 119 245
70 % 107 119 280
50 % 107 119 314
40 % 107 119 342
30 % 107 119 352
Entity #11 | Chains: M
TRANSCRIPTION FACTOR II B (TFIIB) protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 114 201
95 % 104 115 278
90 % 104 115 291
70 % 104 115 317
50 % 105 125 308
40 % 113 133 294
30 % 113 136 302
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 110 207
95 % 102 110 294
90 % 102 110 308
70 % 102 110 330
50 % 103 111 349
40 % 103 111 381
30 % 103 111 387
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 124 152
95 % 110 124 214
90 % 110 124 225
70 % 110 124 258
50 % 111 125 294
40 % 111 134 293
30 % 111 134 313
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 118 168
95 % 107 118 240
90 % 107 118 251
70 % 107 118 284
50 % 108 129 280
40 % 108 129 307
30 % 108 129 328
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 123 158
95 % 109 124 218
90 % 109 124 228
70 % 109 124 262
50 % 109 124 305
40 % 109 124 327
30 % 110 135 308
Entity #7 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 114 202
95 % 103 114 284
90 % 103 114 298
70 % 103 114 322
50 % 104 115 340
40 % 104 115 369
30 % 104 118 371
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 123 159
95 % 109 123 224
90 % 109 123 235
70 % 110 133 214
50 % 118 141 242
40 % 118 141 268
30 % 118 141 283
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 115 200
95 % 104 115 282
90 % 104 115 295
70 % 104 115 320
50 % 104 115 344
40 % 105 116 364
30 % 105 116 375

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.