Sequence Similarity Clusters for the Entities in PDB 1R5U

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 114 213
95 % 104 114 302
90 % 104 114 317
70 % 104 114 356
50 % 105 124 368
40 % 105 124 398
30 % 105 124 399
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 127 180
95 % 107 127 248
90 % 107 127 256
70 % 107 127 291
50 % 107 127 326
40 % 107 127 357
30 % 107 127 361
Entity #11 | Chains: M
TRANSCRIPTION FACTOR II B (TFIIB) protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 115 210
95 % 104 116 291
90 % 104 116 304
70 % 104 116 344
50 % 105 126 358
40 % 113 134 326
30 % 113 137 329
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 111 215
95 % 102 111 309
90 % 102 111 325
70 % 102 111 365
50 % 103 112 418
40 % 103 112 457
30 % 103 112 449
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 132 171
95 % 110 132 233
90 % 110 132 244
70 % 110 132 280
50 % 111 133 305
40 % 111 142 305
30 % 111 142 317
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 126 181
95 % 107 126 251
90 % 107 126 259
70 % 107 126 294
50 % 108 137 300
40 % 108 137 319
30 % 108 137 333
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 131 173
95 % 109 132 236
90 % 109 132 247
70 % 109 132 281
50 % 109 132 314
40 % 109 132 335
30 % 110 143 315
Entity #7 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 115 211
95 % 103 115 301
90 % 103 115 315
70 % 103 115 354
50 % 104 116 403
40 % 104 116 438
30 % 104 119 426
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 131 174
95 % 109 131 238
90 % 109 131 248
70 % 110 141 264
50 % 118 149 259
40 % 118 149 282
30 % 118 149 290
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 116 209
95 % 104 116 297
90 % 104 116 311
70 % 104 116 349
50 % 104 116 406
40 % 105 117 429
30 % 105 117 430

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.