Sequence Similarity Clusters for the Entities in PDB 1R5U

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 115 229
95 % 105 115 321
90 % 105 115 339
70 % 107 120 356
50 % 108 132 368
40 % 108 132 393
30 % 108 132 397
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 138 183
95 % 108 138 244
90 % 108 138 259
70 % 108 138 289
50 % 110 143 313
40 % 110 143 328
30 % 110 143 336
Entity #11 | Chains: M
TRANSCRIPTION FACTOR II B (TFIIB) protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 116 226
95 % 105 117 313
90 % 105 117 329
70 % 108 124 339
50 % 108 134 357
40 % 116 142 324
30 % 116 145 330
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 112 232
95 % 103 112 326
90 % 103 112 345
70 % 103 112 378
50 % 104 114 439
40 % 104 114 470
30 % 104 114 471
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 111 143 172
95 % 111 143 233
90 % 111 143 248
70 % 113 148 271
50 % 114 150 291
40 % 114 160 284
30 % 114 160 293
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 137 185
95 % 108 137 247
90 % 108 137 262
70 % 108 137 294
50 % 111 155 279
40 % 111 155 298
30 % 111 155 307
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 142 174
95 % 110 143 234
90 % 110 143 249
70 % 110 143 280
50 % 112 148 296
40 % 112 148 311
30 % 113 161 292
Entity #7 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 116 228
95 % 104 116 320
90 % 104 116 338
70 % 106 121 355
50 % 107 123 406
40 % 107 123 436
30 % 107 126 425
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 142 175
95 % 110 142 236
90 % 110 142 250
70 % 113 159 250
50 % 121 167 246
40 % 121 167 264
30 % 121 167 270
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 117 224
95 % 105 117 315
90 % 105 117 333
70 % 105 117 369
50 % 107 122 416
40 % 108 124 434
30 % 108 124 435

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.