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An Information Portal to 111749 Biological Macromolecular Structures

RNA POLYMERASE II TFIIB COMPLEX
Sequence Clustering and Redundancy Reduction Results
1R5U
Sequence Clusters for the Sequence Entities in PDB 1R5U
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 108 198
95% 102 108 274
90% 102 108 288
70% 102 108 310
50% 103 109 330
40% 103 109 360
30% 103 109 366
Entity #10: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 113 187
95% 106 113 254
90% 106 113 265
70% 106 113 291
50% 106 113 318
40% 106 113 350
30% 106 113 357
Entity #11: Chains: M - TRANSCRIPTION FACTOR II B (TFIIB) protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 109 195
95% 102 110 267
90% 102 110 280
70% 102 110 302
50% 103 111 321
40% 111 119 308
30% 111 119 319
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 108 200
95% 102 108 277
90% 102 108 291
70% 102 108 311
50% 103 109 331
40% 103 109 364
30% 103 109 368
Entity #4: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 115 171
95% 107 115 240
90% 107 115 250
70% 107 115 279
50% 108 116 305
40% 108 116 335
30% 108 116 342
Entity #5: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 112 188
95% 106 112 256
90% 106 112 268
70% 106 112 294
50% 107 114 313
40% 107 114 341
30% 107 114 351
Entity #6: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 114 180
95% 106 115 242
90% 106 115 252
70% 106 115 282
50% 106 115 314
40% 106 115 342
30% 107 117 336
Entity #7: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 109 196
95% 101 109 273
90% 101 109 287
70% 101 109 309
50% 102 110 329
40% 102 110 359
30% 102 110 365
Entity #8: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 114 184
95% 106 114 252
90% 106 114 262
70% 107 115 273
50% 115 123 270
40% 115 123 296
30% 115 123 311
Entity #9: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 110 194
95% 102 110 271
90% 102 110 284
70% 102 110 305
50% 102 110 334
40% 103 111 354
30% 103 111 363
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.