Sequence Similarity Clusters for the Entities in PDB 1R4N

Entity #1 | Chains: A,C,E,G
amyloid beta precursor protein-binding protein 1 protein, length: 529 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 1924
95 % 9 9 1952
90 % 9 9 2000
70 % 9 9 2017
50 % 9 9 2016
40 % 9 9 2017
30 % 9 9 1936
Entity #2 | Chains: B,D,F,H
ubiquitin-activating enzyme E1C protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 4226
95 % 8 8 2033
90 % 8 8 2088
70 % 8 8 2097
50 % 8 8 2090
40 % 8 8 2094
30 % 8 8 2003
Entity #3 | Chains: I,J,K,L
Ubiquitin-like protein NEDD8 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 13 1578
95 % 15 17 1243
90 % 15 17 1269
70 % 15 18 1250
50 % 297 391 12
40 % 309 413 16
30 % 563 908 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.