Sequence Similarity Clusters for the Entities in PDB 1R4N

Entity #1 | Chains: A,C,E,G
amyloid beta precursor protein-binding protein 1 protein, length: 529 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 1783
95 % 9 9 1817
90 % 9 9 1858
70 % 9 9 1884
50 % 9 9 1906
40 % 9 9 1925
30 % 9 9 1841
Entity #2 | Chains: B,D,F,H
ubiquitin-activating enzyme E1C protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 4014
95 % 8 8 1887
90 % 8 8 1934
70 % 8 8 1959
50 % 8 8 1978
40 % 8 8 1995
30 % 8 8 1909
Entity #3 | Chains: I,J,K,L
Ubiquitin-like protein NEDD8 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 1880
95 % 13 14 1319
90 % 13 14 1342
70 % 13 15 1312
50 % 263 353 13
40 % 275 375 16
30 % 514 854 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.