Sequence Similarity Clusters for the Entities in PDB 1R4N

Entity #1 | Chains: A,C,E,G
amyloid beta precursor protein-binding protein 1 protein, length: 529 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 2075
95 % 9 9 2119
90 % 9 9 2173
70 % 9 9 2168
50 % 9 9 2152
40 % 9 9 2145
30 % 9 9 2055
Entity #2 | Chains: B,D,F,H
ubiquitin-activating enzyme E1C protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 4549
95 % 8 8 2185
90 % 8 8 2243
70 % 8 8 2246
50 % 8 8 2231
40 % 8 8 2218
30 % 8 8 2116
Entity #3 | Chains: I,J,K,L
Ubiquitin-like protein NEDD8 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 13 1713
95 % 15 17 1333
90 % 15 17 1358
70 % 15 18 1322
50 % 349 448 12
40 % 362 472 16
30 % 656 1019 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.