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APPBP1-UBA3-NEDD8, an E1-ubiquitin-like protein complex with ATP
Sequence Clustering and Redundancy Reduction Results
1R4N
Sequence Clusters for the Sequence Entities in PDB 1R4N
Entity #1: Chains: A,C,E,G - amyloid beta precursor protein-binding protein 1 protein, length: 529 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 6 1502
95% 9 9 1543
90% 9 9 1583
70% 9 9 1611
50% 9 9 1651
40% 9 9 1682
30% 9 9 1614
Entity #2: Chains: B,D,F,H - ubiquitin-activating enzyme E1C protein, length: 431 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 3350
95% 8 8 1599
90% 8 8 1645
70% 8 8 1676
50% 8 8 1712
40% 8 8 1746
30% 8 8 1680
Entity #3: Chains: I,J,K,L - Ubiquitin-like protein NEDD8 protein, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 10 1579
95% 13 14 1142
90% 13 14 1160
70% 13 15 1150
50% 200 275 19
40% 212 296 23
30% 421 735 10
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.