Sequence Similarity Clusters for the Entities in PDB 1R4N

Entity #1 | Chains: A,C,E,G
amyloid beta precursor protein-binding protein 1 protein, length: 529 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 2017
95 % 9 9 2061 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 9 9 2115
70 % 9 9 2115
50 % 9 9 2095
40 % 9 9 2091
30 % 9 9 2002
Entity #2 | Chains: B,D,F,H
ubiquitin-activating enzyme E1C protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4427
95 % 8 8 2123 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.5
PDBFlex
90 % 8 8 2182
70 % 8 8 2188
50 % 8 8 2168
40 % 8 8 2164
30 % 8 8 2067
Entity #3 | Chains: I,J,K,L
Ubiquitin-like protein NEDD8 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 13 1661
95 % 15 17 1309 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.3
PDBFlex
90 % 15 17 1333
70 % 15 18 1302
50 % 334 433 12
40 % 347 456 17
30 % 616 972 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.