Sequence Similarity Clusters for the Entities in PDB 1R4N

Entity #1 | Chains: A,C,E,G
amyloid beta precursor protein-binding protein 1 protein, length: 529 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 2749
95 % 9 9 2392 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 9 9 2460
70 % 9 9 2454
50 % 9 9 2423
40 % 9 9 2389
30 % 9 9 2247
Entity #2 | Chains: B,D,F,H
ubiquitin-activating enzyme E1C protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 11198
95 % 8 8 2522 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.6
PDBFlex
90 % 8 8 2590
70 % 8 8 2580
50 % 8 8 2559
40 % 8 8 2510
30 % 8 8 2358
Entity #3 | Chains: I,J,K,L
Ubiquitin-like protein NEDD8 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 14 2032
95 % 15 17 1442 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.3
PDBFlex
90 % 15 17 1466
70 % 15 18 1452
50 % 403 509 11
40 % 416 535 16
30 % 510 707 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures