Sequence Similarity Clusters for the Entities in PDB 1R4N

Entity #1 | Chains: A,C,E,G
amyloid beta precursor protein-binding protein 1 protein, length: 529 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 2616
95 % 9 9 2279 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 9 9 2345
70 % 9 9 2343
50 % 9 9 2320
40 % 9 9 2299
30 % 9 9 2160
Entity #2 | Chains: B,D,F,H
ubiquitin-activating enzyme E1C protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10656
95 % 8 8 2404 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.5
PDBFlex
90 % 8 8 2477
70 % 8 8 2478
50 % 8 8 2455
40 % 8 8 2411
30 % 8 8 2262
Entity #3 | Chains: I,J,K,L
Ubiquitin-like protein NEDD8 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 14 1924
95 % 15 17 1364 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.3
PDBFlex
90 % 15 17 1385
70 % 15 18 1381
50 % 381 482 10
40 % 388 502 15
30 % 467 655 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures