Sequence Similarity Clusters for the Entities in PDB 1R4N

Entity #1 | Chains: A,C,E,G
amyloid beta precursor protein-binding protein 1 protein, length: 529 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 1981
95 % 9 9 2018
90 % 9 9 2072
70 % 9 9 2076
50 % 9 9 2061
40 % 9 9 2065
30 % 9 9 1972
Entity #2 | Chains: B,D,F,H
ubiquitin-activating enzyme E1C protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 4337
95 % 8 8 2090
90 % 8 8 2150
70 % 8 8 2159
50 % 8 8 2139
40 % 8 8 2140
30 % 8 8 2040
Entity #3 | Chains: I,J,K,L
Ubiquitin-like protein NEDD8 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 13 1629
95 % 15 17 1282
90 % 15 17 1306
70 % 15 18 1281
50 % 309 403 12
40 % 321 425 18
30 % 584 929 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.