Sequence Similarity Clusters for the Entities in PDB 1R4N

Entity #1 | Chains: A,C,E,G
amyloid beta precursor protein-binding protein 1 protein, length: 529 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 1765
95 % 9 9 1802
90 % 9 9 1843
70 % 9 9 1867
50 % 9 9 1889
40 % 9 9 1909
30 % 9 9 1821
Entity #2 | Chains: B,D,F,H
ubiquitin-activating enzyme E1C protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 3972
95 % 8 8 1872
90 % 8 8 1918
70 % 8 8 1942
50 % 8 8 1960
40 % 8 8 1977
30 % 8 8 1890
Entity #3 | Chains: I,J,K,L
Ubiquitin-like protein NEDD8 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 1860
95 % 13 14 1310
90 % 13 14 1332
70 % 13 15 1296
50 % 259 348 13
40 % 271 369 16
30 % 507 845 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.