Sequence Similarity Clusters for the Entities in PDB 1QQP

Entity #1 | Chains: 1
PROTEIN (GENOME POLYPROTEIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60397
95 % 1 3 23027 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 3 22281
70 % 1 20 3145
50 % 1 22 2766
40 % 1 22 2726
30 % 1 22 2556
Entity #2 | Chains: 2
PROTEIN (GENOME POLYPROTEIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27474
95 % 1 12 5751 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 1 12 5762
70 % 1 22 2804
50 % 1 22 2767
40 % 1 22 2727
30 % 4 194 165
Entity #3 | Chains: 3
PROTEIN (GENOME POLYPROTEIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27394
95 % 1 12 5744 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 1 12 5753
70 % 1 22 2299
50 % 1 24 2096
40 % 1 36 313
30 % 4 208 146
Entity #4 | Chains: 4
PROTEIN (GENOME POLYPROTEIN) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 47479
95 % 1 18 3603 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 1 18 3652
70 % 1 18 3611
50 % 1 18 3511
40 % 1 18 3391
30 % 1 25 663

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.