Sequence Similarity Clusters for the Entities in PDB 1QQP

Entity #1 | Chains: 1
PROTEIN (GENOME POLYPROTEIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27775
95 % 1 3 24401 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 3 23597
70 % 1 20 3261
50 % 1 22 2961
40 % 1 22 2966
30 % 1 27 424
Entity #2 | Chains: 2
PROTEIN (GENOME POLYPROTEIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 16529
95 % 1 12 5977 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 1 12 5984
70 % 1 22 3025
50 % 1 22 3052
40 % 1 22 2975
30 % 4 197 184
Entity #3 | Chains: 3
PROTEIN (GENOME POLYPROTEIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27776
95 % 1 12 5904 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 1 12 5917
70 % 1 22 2550
50 % 1 24 2351
40 % 1 36 395
30 % 4 210 164
Entity #4 | Chains: 4
PROTEIN (GENOME POLYPROTEIN) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 5851
95 % 1 17 4070 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 1 18 4025
70 % 1 18 3936
50 % 1 18 3824
40 % 1 18 3644
30 % 1 18 3324

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures