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An Information Portal to 105097 Biological Macromolecular Structures

Molecular Architecture of the Rotary Motor in ATP Synthase from Yeast Mitochondria
Sequence Clustering and Redundancy Reduction Results
1QO1
Sequence Clusters for the Sequence Entities in PDB 1QO1
Entity #1: Chains: A,B,C - ATP SYNTHASE ALPHA CHAIN protein, length: 510 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 20 347
95% 31 32 270
90% 31 32 282
70% 43 44 117
50% 49 50 139
40% 49 50 168
30% 49 50 192
Entity #2: Chains: D,E,F - ATP SYNTHASE BETA CHAIN protein, length: 482 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 31 195
95% 32 33 271
90% 32 33 283
70% 50 51 102
50% 50 51 140
40% 50 51 169
30% 50 51 193
Entity #3: Chains: G - ATP SYNTHASE GAMMA CHAIN protein, length: 272 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 30 849
95% 29 30 1197
90% 29 30 1212
70% 31 32 1174
50% 31 32 1238
40% 42 43 697
30% 44 45 626
Entity #4: Chains: J - ATP SYNTHASE DELTA CHAIN protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 5380
95% 4 6 5987
90% 4 6 5966
70% 4 6 5834
50% 4 6 5452
40% 4 6 5083
30% 8 10 3108
Entity #5: Chains: K,L,M,N,O,P,Q,R,S,T - ATP SYNTHASE PROTEIN 9 protein, length: 79 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 1231
95% 4 9 1460
90% 4 9 1492
70% 4 9 1513
50% 4 9 1558
40% 4 9 1594
30% 4 9 1531
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.