Sequence Similarity Clusters for the Entities in PDB 1QO1

Entity #1 | Chains: A,B,C
ATP SYNTHASE ALPHA CHAIN protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 29 297
95 % 40 41 275 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 40 41 287
70 % 58 193 165
50 % 70 71 165
40 % 70 71 181
30 % 70 71 196
Entity #2 | Chains: D,E,F
ATP SYNTHASE BETA CHAIN protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 40 203
95 % 41 42 276 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 41 42 288
70 % 71 72 137
50 % 71 72 166
40 % 71 72 182
30 % 71 72 197
Entity #3 | Chains: G
ATP SYNTHASE GAMMA CHAIN protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 39 868
95 % 38 39 1177 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.3
PDBFlex
90 % 38 39 1205
70 % 40 41 1179
50 % 40 41 1238
40 % 64 65 623
30 % 64 65 616
Entity #4 | Chains: J
ATP SYNTHASE DELTA CHAIN protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 5235
95 % 7 9 5892 Flexibility: High
Max RMSD: 19.9, Avg RMSD: 10.7
PDBFlex
90 % 7 9 5885
70 % 7 9 5758
50 % 7 9 5405
40 % 7 9 5075
30 % 14 16 2551
Entity #5 | Chains: K,L,M,N,O,P,Q,R,S,T
ATP SYNTHASE PROTEIN 9 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 661
95 % 7 12 839 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 7 12 869
70 % 7 12 904
50 % 7 12 956
40 % 7 12 981
30 % 54 59 72

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.