Sequence Similarity Clusters for the Entities in PDB 1QO1

Entity #1 | Chains: A,B,C
ATP SYNTHASE ALPHA CHAIN protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 29 307
95 % 40 41 285 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 40 41 298
70 % 58 59 170
50 % 70 71 172
40 % 70 71 186
30 % 70 71 201
Entity #2 | Chains: D,E,F
ATP SYNTHASE BETA CHAIN protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 40 210
95 % 41 42 286 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.1
PDBFlex
90 % 41 42 299
70 % 71 72 143
50 % 71 72 173
40 % 71 72 187
30 % 71 72 202
Entity #3 | Chains: G
ATP SYNTHASE GAMMA CHAIN protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 39 902
95 % 38 39 1207 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.2
PDBFlex
90 % 38 39 1235
70 % 40 41 1206
50 % 40 41 1264
40 % 64 65 637
30 % 64 65 625
Entity #4 | Chains: J
ATP SYNTHASE DELTA CHAIN protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 5395
95 % 7 9 6057 Flexibility: High
Max RMSD: 19.9, Avg RMSD: 11.8
PDBFlex
90 % 7 9 6054
70 % 7 9 5904
50 % 7 9 5544
40 % 7 9 5209
30 % 14 16 2614
Entity #5 | Chains: K,L,M,N,O,P,Q,R,S,T
ATP SYNTHASE PROTEIN 9 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 680
95 % 7 12 866 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 7 12 900
70 % 7 12 933
50 % 7 12 975
40 % 7 12 1003
30 % 55 60 71

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.