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Molecular Architecture of the Rotary Motor in ATP Synthase from Yeast Mitochondria
Sequence Clustering and Redundancy Reduction Results
1QO1
Sequence Clusters for the Sequence Entities in PDB 1QO1
Entity #1: Chains: A,B,C - ATP SYNTHASE ALPHA CHAIN protein, length: 510 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 20 343
95% 31 32 263
90% 31 32 274
70% 43 44 110
50% 49 50 132
40% 49 50 161
30% 49 50 185
Entity #2: Chains: D,E,F - ATP SYNTHASE BETA CHAIN protein, length: 482 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 31 191
95% 32 33 264
90% 32 33 275
70% 50 51 99
50% 50 51 133
40% 50 51 162
30% 50 51 186
Entity #3: Chains: G - ATP SYNTHASE GAMMA CHAIN protein, length: 272 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 30 760
95% 29 30 1101
90% 29 30 1120
70% 31 32 1070
50% 31 32 1138
40% 42 43 648
30% 44 45 598
Entity #4: Chains: J - ATP SYNTHASE DELTA CHAIN protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 5227
95% 4 6 5833
90% 4 6 5810
70% 4 6 5683
50% 4 6 5330
40% 4 6 4973
30% 8 10 3043
Entity #5: Chains: K,L,M,N,O,P,Q,R,S,T - ATP SYNTHASE PROTEIN 9 protein, length: 79 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 1128
95% 4 9 1349
90% 4 9 1380
70% 4 9 1408
50% 4 9 1488
40% 4 9 1531
30% 4 9 1478
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.