Sequence Similarity Clusters for the Entities in PDB 1QMZ

Entity #1 | Chains: A,C
CELL DIVISION PROTEIN KINASE 2 protein, length: 299 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 273 369 42
95 % 287 393 35 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 287 393 42
70 % 287 393 52
50 % 302 448 72
40 % 309 483 66
30 % 2581 4570 2
Entity #2 | Chains: B,D
G2/MITOTIC-SPECIFIC CYCLIN A protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 84 191
95 % 39 110 188 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 43 114 171
70 % 43 114 189
50 % 43 114 232
40 % 43 114 259
30 % 47 123 262
Entity #3 | Chains: E,F
SUBSTRATE PEPTIDE protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures