Sequence Similarity Clusters for the Entities in PDB 1QMZ

Entity #1 | Chains: A,C
CELL DIVISION PROTEIN KINASE 2 protein, length: 299 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 266 364 22
95 % 275 379 34 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 275 379 37
70 % 275 379 44
50 % 288 404 67
40 % 296 460 49
30 % 2164 3912 2
Entity #2 | Chains: B,D
G2/MITOTIC-SPECIFIC CYCLIN A protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 86 167
95 % 36 105 151 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 40 109 158
70 % 40 109 175
50 % 40 109 216
40 % 40 109 235
30 % 43 115 237
Entity #3 | Chains: E,F
SUBSTRATE PEPTIDE protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures