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PARTIAL MODEL FOR 30S RIBOSOMAL SUBUNIT
Sequence Clustering and Redundancy Reduction Results
1QD7
Sequence Clusters for the Sequence Entities in PDB 1QD7
Entity #1: Chains: A - CENTRAL FRAGMENT OF 16 S RNA rna, length: 271 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - S20 RIBOSOMAL PROTEIN protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - END FRAGMENT OF 16 S RNA rna, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - S4 RIBOSOMAL PROTEIN protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 17453
95% 4 4 15215
90% 4 4 14850
70% 4 4 13848
50% 4 4 12150
40% 4 4 10883
30% 4 4 9374
Entity #4: Chains: D - S5 RIBOSOMAL PROTEIN protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 17600
95% 4 4 15341
90% 4 4 14974
70% 5 5 10657
50% 281 281 37
40% 281 281 48
30% 283 283 72
Entity #5: Chains: E - S6 RIBOSOMAL PROTEIN protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 204 204 18
95% 210 210 29
90% 210 210 31
70% 210 210 42
50% 210 210 83
40% 210 210 107
30% 249 249 87
Entity #6: Chains: F - S7 RIBOSOMAL PROTEIN protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 203 19
95% 204 204 32
90% 204 204 34
70% 204 204 44
50% 247 247 55
40% 248 248 70
30% 248 248 94
Entity #7: Chains: G - S8 RIBOSOMAL PROTEIN protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 199 199 22
95% 199 199 37
90% 203 203 35
70% 203 203 45
50% 283 283 36
40% 285 285 46
30% 339 339 44
Entity #8: Chains: H - S15 RIBOSOMAL PROTEIN protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 37821
95% 2 2 28417
90% 2 2 27304
70% 3 3 17294
50% 289 290 33
40% 290 291 43
30% 290 291 67
Entity #9: Chains: I - S17 RIBOSOMAL PROTEIN protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 23147
95% 2 3 19309
90% 2 3 18742
70% 3 4 14668
50% 80 81 298
40% 80 81 325
30% 82 83 333
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.