Sequence Similarity Clusters for the Entities in PDB 1QD7

Entity #1 | Chains: A
CENTRAL FRAGMENT OF 16 S RNA rna, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
S20 RIBOSOMAL PROTEIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
END FRAGMENT OF 16 S RNA rna, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
S4 RIBOSOMAL PROTEIN protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 19445
95 % 4 4 16869
90 % 4 4 16445
70 % 4 4 15260
50 % 4 4 13355
40 % 4 4 11937
30 % 4 4 10243
Entity #4 | Chains: D
S5 RIBOSOMAL PROTEIN protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 19610
95 % 4 4 17008
90 % 4 4 16579
70 % 5 5 11731
50 % 346 346 30
40 % 346 346 41
30 % 348 348 57
Entity #5 | Chains: E
S6 RIBOSOMAL PROTEIN protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 259 259 24
95 % 265 265 21
90 % 265 265 24
70 % 265 265 32
50 % 265 265 79
40 % 265 265 100
30 % 304 304 78
Entity #6 | Chains: F
S7 RIBOSOMAL PROTEIN protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 258 258 25
95 % 259 259 36
90 % 259 259 41
70 % 259 259 50
50 % 304 304 51
40 % 305 305 63
30 % 305 305 86
Entity #7 | Chains: G
S8 RIBOSOMAL PROTEIN protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 254 254 29
95 % 254 254 40
90 % 258 258 42
70 % 258 258 51
50 % 348 348 29
40 % 350 350 39
30 % 423 423 33
Entity #8 | Chains: H
S15 RIBOSOMAL PROTEIN protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 41817
95 % 2 2 31252
90 % 2 2 29929
70 % 3 3 19020
50 % 354 355 26
40 % 355 356 36
30 % 355 356 55
Entity #9 | Chains: I
S17 RIBOSOMAL PROTEIN protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 25754
95 % 2 3 21393
90 % 2 3 20734
70 % 3 4 16133
50 % 90 91 307
40 % 90 91 331
30 % 92 93 338

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.