Sequence Similarity Clusters for the Entities in PDB 1QD7

Entity #1 | Chains: A
CENTRAL FRAGMENT OF 16 S RNA rna, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
S20 RIBOSOMAL PROTEIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
END FRAGMENT OF 16 S RNA rna, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
S4 RIBOSOMAL PROTEIN protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 21206
95 % 4 4 18305
90 % 4 4 17839
70 % 4 4 16526
50 % 4 4 14421
40 % 4 4 12847
30 % 4 4 11001
Entity #4 | Chains: D
S5 RIBOSOMAL PROTEIN protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 21388
95 % 4 4 18456
90 % 4 4 17982
70 % 6 6 11185
50 % 398 398 31
40 % 398 398 43
30 % 400 400 59
Entity #5 | Chains: E
S6 RIBOSOMAL PROTEIN protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 274 274 27
95 % 280 280 36
90 % 280 280 41
70 % 280 280 52
50 % 280 280 87
40 % 280 280 106
30 % 334 334 90
Entity #6 | Chains: F
S7 RIBOSOMAL PROTEIN protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 273 273 28
95 % 274 274 41
90 % 274 274 45
70 % 274 274 56
50 % 338 338 71
40 % 341 341 79
30 % 341 341 93
Entity #7 | Chains: G
S8 RIBOSOMAL PROTEIN protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 269 33
95 % 269 269 46
90 % 273 273 46
70 % 273 273 57
50 % 399 399 29
40 % 403 403 38
30 % 512 512 30
Entity #8 | Chains: H
S15 RIBOSOMAL PROTEIN protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 45394
95 % 2 2 33881
90 % 2 2 32421
70 % 4 4 17493
50 % 405 406 27
40 % 408 409 36
30 % 408 409 56
Entity #9 | Chains: I
S17 RIBOSOMAL PROTEIN protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 28070
95 % 2 3 23250
90 % 2 3 22524
70 % 4 5 13056
50 % 126 127 252
40 % 126 127 273
30 % 128 129 276

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.