Sequence Similarity Clusters for the Entities in PDB 1QD7

Entity #1 | Chains: A
CENTRAL FRAGMENT OF 16 S RNA rna, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
S20 RIBOSOMAL PROTEIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
END FRAGMENT OF 16 S RNA rna, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
S4 RIBOSOMAL PROTEIN protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 20059
95 % 4 4 17352
90 % 4 4 16915
70 % 4 4 15694
50 % 4 4 13712
40 % 4 4 12228
30 % 4 4 10482
Entity #4 | Chains: D
S5 RIBOSOMAL PROTEIN protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 20234
95 % 4 4 17497
90 % 4 4 17052
70 % 5 5 12108
50 % 360 360 30
40 % 360 360 40
30 % 362 362 58
Entity #5 | Chains: E
S6 RIBOSOMAL PROTEIN protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 261 261 25
95 % 267 267 34
90 % 267 267 37
70 % 267 267 46
50 % 267 267 84
40 % 267 267 103
30 % 313 313 77
Entity #6 | Chains: F
S7 RIBOSOMAL PROTEIN protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 260 260 26
95 % 261 261 37
90 % 261 261 42
70 % 261 261 51
50 % 313 313 54
40 % 314 314 68
30 % 314 314 89
Entity #7 | Chains: G
S8 RIBOSOMAL PROTEIN protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 256 256 31
95 % 256 256 42
90 % 260 260 43
70 % 260 260 52
50 % 362 362 29
40 % 364 364 39
30 % 443 443 33
Entity #8 | Chains: H
S15 RIBOSOMAL PROTEIN protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 43033
95 % 2 2 32122
90 % 2 2 30763
70 % 3 3 19564
50 % 368 369 26
40 % 369 370 36
30 % 369 370 56
Entity #9 | Chains: I
S17 RIBOSOMAL PROTEIN protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 26569
95 % 2 3 22010
90 % 2 3 21327
70 % 3 4 16583
50 % 102 103 274
40 % 102 103 294
30 % 104 105 301

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.