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An Information Portal to 110071 Biological Macromolecular Structures

PARTIAL MODEL FOR 30S RIBOSOMAL SUBUNIT
Sequence Clustering and Redundancy Reduction Results
1QD7
Sequence Clusters for the Sequence Entities in PDB 1QD7
Entity #1: Chains: A - CENTRAL FRAGMENT OF 16 S RNA rna, length: 271 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - S20 RIBOSOMAL PROTEIN protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - END FRAGMENT OF 16 S RNA rna, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - S4 RIBOSOMAL PROTEIN protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 17726
95% 4 4 15428
90% 4 4 15063
70% 4 4 14036
50% 4 4 12308
40% 4 4 11022
30% 4 4 9484
Entity #4: Chains: D - S5 RIBOSOMAL PROTEIN protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 17875
95% 4 4 15556
90% 4 4 15188
70% 5 5 10794
50% 304 304 34
40% 304 304 46
30% 306 306 64
Entity #5: Chains: E - S6 RIBOSOMAL PROTEIN protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 225 225 24
95% 231 231 23
90% 231 231 28
70% 231 231 39
50% 231 231 82
40% 231 231 104
30% 270 270 77
Entity #6: Chains: F - S7 RIBOSOMAL PROTEIN protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 224 224 26
95% 225 225 38
90% 225 225 42
70% 225 225 52
50% 268 268 50
40% 269 269 60
30% 269 269 80
Entity #7: Chains: G - S8 RIBOSOMAL PROTEIN protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 220 31
95% 220 220 43
90% 224 224 43
70% 224 224 53
50% 306 306 33
40% 308 308 43
30% 364 364 40
Entity #8: Chains: H - S15 RIBOSOMAL PROTEIN protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 38379
95% 2 2 28801
90% 2 2 27661
70% 3 3 17523
50% 312 313 28
40% 313 314 39
30% 313 314 55
Entity #9: Chains: I - S17 RIBOSOMAL PROTEIN protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 23509
95% 2 3 19589
90% 2 3 19015
70% 3 4 14866
50% 82 83 300
40% 82 83 330
30% 84 85 331
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.