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PARTIAL MODEL FOR 30S RIBOSOMAL SUBUNIT
Sequence Clustering and Redundancy Reduction Results
1QD7
Sequence Clusters for the Sequence Entities in PDB 1QD7
Entity #1: Chains: A - CENTRAL FRAGMENT OF 16 S RNA rna, length: 271 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - S20 RIBOSOMAL PROTEIN protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - END FRAGMENT OF 16 S RNA rna, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - S4 RIBOSOMAL PROTEIN protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 16550
95% 4 4 14528
90% 4 4 14186
70% 4 4 13205
50% 4 4 11587
40% 4 4 10376
30% 4 4 8965
Entity #4: Chains: D - S5 RIBOSOMAL PROTEIN protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 16698
95% 4 4 14652
90% 4 4 14308
70% 4 4 13309
50% 372 372 37
40% 372 372 50
30% 374 374 72
Entity #5: Chains: E - S6 RIBOSOMAL PROTEIN protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 265 265 18
95% 271 271 33
90% 271 271 35
70% 271 271 47
50% 271 271 87
40% 271 271 112
30% 318 318 94
Entity #6: Chains: F - S7 RIBOSOMAL PROTEIN protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 264 264 19
95% 265 265 37
90% 265 265 39
70% 265 265 49
50% 313 313 56
40% 314 314 72
30% 314 314 96
Entity #7: Chains: G - S8 RIBOSOMAL PROTEIN protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 260 260 21
95% 260 260 40
90% 264 264 40
70% 264 264 50
50% 374 374 35
40% 376 376 47
30% 413 413 52
Entity #8: Chains: H - S15 RIBOSOMAL PROTEIN protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 35810
95% 2 2 26967
90% 2 2 25947
70% 2 2 23382
50% 380 381 32
40% 380 381 43
30% 380 381 68
Entity #9: Chains: I - S17 RIBOSOMAL PROTEIN protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21966
95% 2 3 18396
90% 2 3 17865
70% 2 3 16428
50% 110 111 291
40% 110 111 316
30% 112 113 324
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.