Sequence Similarity Clusters for the Entities in PDB 1QD7

Entity #1 | Chains: A
CENTRAL FRAGMENT OF 16 S RNA rna, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
S20 RIBOSOMAL PROTEIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
END FRAGMENT OF 16 S RNA rna, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
S4 RIBOSOMAL PROTEIN protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 20654
95 % 4 4 17843
90 % 4 4 17392
70 % 4 4 16116
50 % 4 4 14081
40 % 4 4 12543
30 % 4 4 10742
Entity #4 | Chains: D
S5 RIBOSOMAL PROTEIN protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 20833
95 % 4 4 17992
90 % 4 4 17533
70 % 6 6 10920
50 % 393 393 29
40 % 393 393 41
30 % 395 395 57
Entity #5 | Chains: E
S6 RIBOSOMAL PROTEIN protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 274 274 24
95 % 280 280 32
90 % 280 280 37
70 % 280 280 48
50 % 280 280 83
40 % 280 280 102
30 % 334 334 87
Entity #6 | Chains: F
S7 RIBOSOMAL PROTEIN protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 273 273 26
95 % 274 274 36
90 % 274 274 40
70 % 274 274 50
50 % 336 336 64
40 % 339 339 74
30 % 339 339 89
Entity #7 | Chains: G
S8 RIBOSOMAL PROTEIN protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 269 32
95 % 269 269 42
90 % 273 273 41
70 % 273 273 51
50 % 394 394 26
40 % 398 398 35
30 % 497 497 28
Entity #8 | Chains: H
S15 RIBOSOMAL PROTEIN protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 44210
95 % 2 2 32979
90 % 2 2 31572
70 % 4 4 17081
50 % 400 401 24
40 % 403 404 33
30 % 403 404 54
Entity #9 | Chains: I
S17 RIBOSOMAL PROTEIN protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 27334
95 % 2 3 22651
90 % 2 3 21944
70 % 4 5 12724
50 % 121 122 249
40 % 121 122 272
30 % 123 124 272

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.