Sequence Similarity Clusters for the Entities in PDB 1QD7

Entity #1 | Chains: A
CENTRAL FRAGMENT OF 16 S RNA rna, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
S20 RIBOSOMAL PROTEIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
END FRAGMENT OF 16 S RNA rna, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
S4 RIBOSOMAL PROTEIN protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 23319
95 % 4 4 20036
90 % 4 4 19488
70 % 4 4 17988
50 % 4 4 15605
40 % 4 4 13872
30 % 4 4 11868
Entity #4 | Chains: D
S5 RIBOSOMAL PROTEIN protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 23515
95 % 4 4 20201 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 4 19645
70 % 14 14 4576
50 % 450 450 31
40 % 450 450 45
30 % 452 452 61
Entity #5 | Chains: E
S6 RIBOSOMAL PROTEIN protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 297 297 24
95 % 303 303 35 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 303 303 39
70 % 303 303 48
50 % 303 303 88
40 % 303 303 109
30 % 386 386 88
Entity #6 | Chains: F
S7 RIBOSOMAL PROTEIN protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 296 296 25
95 % 297 297 38 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 297 297 42
70 % 297 297 51
50 % 388 388 60
40 % 394 394 71
30 % 394 394 87
Entity #7 | Chains: G
S8 RIBOSOMAL PROTEIN protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 292 292 29
95 % 292 292 42 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 296 296 43
70 % 296 296 52
50 % 454 454 27
40 % 461 461 39
30 % 589 589 32
Entity #8 | Chains: H
S15 RIBOSOMAL PROTEIN protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 49288
95 % 2 2 36742 Flexibility: Medium
Max RMSD: 9.2, Avg RMSD: 9.2
PDBFlex
90 % 2 2 35059
70 % 11 11 6186
50 % 460 461 26
40 % 465 466 37
30 % 465 466 56
Entity #9 | Chains: I
S17 RIBOSOMAL PROTEIN protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 30666
95 % 2 3 25374
90 % 2 3 24524
70 % 12 13 5017
50 % 154 155 230
40 % 154 155 248
30 % 156 157 255

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures