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PARTIAL MODEL FOR 30S RIBOSOMAL SUBUNIT
Sequence Clustering and Redundancy Reduction Results
1QD7
Sequence Clusters for the Sequence Entities in PDB 1QD7
Entity #1: Chains: A - CENTRAL FRAGMENT OF 16 S RNA rna, length: 271 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - S20 RIBOSOMAL PROTEIN protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - END FRAGMENT OF 16 S RNA rna, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - S4 RIBOSOMAL PROTEIN protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 17340
95% 4 4 15124
90% 4 4 14756
70% 4 4 13723
50% 4 4 12035
40% 4 4 10774
30% 4 4 9282
Entity #4: Chains: D - S5 RIBOSOMAL PROTEIN protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 17487
95% 4 4 15249
90% 4 4 14878
70% 4 4 13826
50% 278 278 37
40% 278 278 47
30% 280 280 71
Entity #5: Chains: E - S6 RIBOSOMAL PROTEIN protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 203 17
95% 209 209 29
90% 209 209 31
70% 209 209 42
50% 209 209 80
40% 209 209 106
30% 247 247 87
Entity #6: Chains: F - S7 RIBOSOMAL PROTEIN protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 202 202 18
95% 203 203 32
90% 203 203 34
70% 203 203 45
50% 245 245 53
40% 246 246 70
30% 246 246 94
Entity #7: Chains: G - S8 RIBOSOMAL PROTEIN protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 198 198 20
95% 198 198 36
90% 202 202 35
70% 202 202 46
50% 280 280 36
40% 282 282 46
30% 335 335 44
Entity #8: Chains: H - S15 RIBOSOMAL PROTEIN protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 37428
95% 2 2 28088
90% 2 2 26996
70% 2 2 24313
50% 286 287 33
40% 286 287 43
30% 286 287 68
Entity #9: Chains: I - S17 RIBOSOMAL PROTEIN protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 22954
95% 2 3 19139
90% 2 3 18569
70% 2 3 17082
50% 78 79 299
40% 78 79 327
30% 80 81 338
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.