Sequence Similarity Clusters for the Entities in PDB 1QD7

Entity #1 | Chains: A
CENTRAL FRAGMENT OF 16 S RNA rna, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
S20 RIBOSOMAL PROTEIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
END FRAGMENT OF 16 S RNA rna, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
S4 RIBOSOMAL PROTEIN protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 21916
95 % 4 4 18897
90 % 4 4 18403
70 % 4 4 17033
50 % 4 4 14819
40 % 4 4 13197
30 % 4 4 11292
Entity #4 | Chains: D
S5 RIBOSOMAL PROTEIN protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 22101
95 % 4 4 19051 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 4 18549
70 % 11 11 6132
50 % 416 416 29
40 % 416 416 42
30 % 418 418 61
Entity #5 | Chains: E
S6 RIBOSOMAL PROTEIN protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 275 275 27
95 % 281 281 37 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 281 281 42
70 % 281 281 51
50 % 281 281 88
40 % 281 281 110
30 % 353 353 93
Entity #6 | Chains: F
S7 RIBOSOMAL PROTEIN protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 274 274 28
95 % 275 275 41 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 275 275 46
70 % 275 275 56
50 % 354 354 68
40 % 359 359 85
30 % 359 359 95
Entity #7 | Chains: G
S8 RIBOSOMAL PROTEIN protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 270 270 32
95 % 270 270 46 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 274 274 47
70 % 274 274 57
50 % 419 419 27
40 % 425 425 37
30 % 538 538 30
Entity #8 | Chains: H
S15 RIBOSOMAL PROTEIN protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 46757
95 % 2 2 34923 Flexibility: Medium
Max RMSD: 9.2, Avg RMSD: 9.2
PDBFlex
90 % 2 2 33389
70 % 9 9 7559
50 % 425 426 25
40 % 430 431 35
30 % 430 431 54
Entity #9 | Chains: I
S17 RIBOSOMAL PROTEIN protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 28944
95 % 2 3 23981
90 % 2 3 23217
70 % 9 10 6960
50 % 143 144 232
40 % 143 144 253
30 % 145 146 260

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.