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An Information Portal to 110790 Biological Macromolecular Structures

PARTIAL MODEL FOR 30S RIBOSOMAL SUBUNIT
Sequence Clustering and Redundancy Reduction Results
1QD7
Sequence Clusters for the Sequence Entities in PDB 1QD7
Entity #1: Chains: A - CENTRAL FRAGMENT OF 16 S RNA rna, length: 271 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - S20 RIBOSOMAL PROTEIN protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - END FRAGMENT OF 16 S RNA rna, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - S4 RIBOSOMAL PROTEIN protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 17900
95% 4 4 15596
90% 4 4 15215
70% 4 4 14169
50% 4 4 12428
40% 4 4 11135
30% 4 4 9579
Entity #4: Chains: D - S5 RIBOSOMAL PROTEIN protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 18051
95% 4 4 15725
90% 4 4 15341
70% 5 5 10877
50% 304 304 36
40% 304 304 47
30% 306 306 65
Entity #5: Chains: E - S6 RIBOSOMAL PROTEIN protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 225 225 24
95% 231 231 24
90% 231 231 29
70% 231 231 41
50% 231 231 83
40% 231 231 105
30% 270 270 79
Entity #6: Chains: F - S7 RIBOSOMAL PROTEIN protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 224 224 26
95% 225 225 40
90% 225 225 44
70% 225 225 55
50% 268 268 51
40% 269 269 62
30% 269 269 81
Entity #7: Chains: G - S8 RIBOSOMAL PROTEIN protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 220 31
95% 220 220 44
90% 224 224 45
70% 224 224 56
50% 306 306 34
40% 308 308 44
30% 365 365 40
Entity #8: Chains: H - S15 RIBOSOMAL PROTEIN protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 38678
95% 2 2 29015
90% 2 2 27855
70% 3 3 17662
50% 312 313 29
40% 313 314 40
30% 313 314 55
Entity #9: Chains: I - S17 RIBOSOMAL PROTEIN protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 23705
95% 2 3 19768
90% 2 3 19177
70% 3 4 14998
50% 82 83 301
40% 82 83 332
30% 84 85 333
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.