Sequence Similarity Clusters for the Entities in PDB 1QAB

Entity #1 | Chains: A,B,C,D
PROTEIN (transthyretin) protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 13 1377
95 % 279 282 11 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.8
PDBFlex
90 % 279 282 12
70 % 285 288 16
50 % 289 292 20
40 % 289 292 29
30 % 301 304 40
Entity #2 | Chains: E,F
PROTEIN (retinol binding protein) protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41344
95 % 10 10 4949 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 23 23 2170
70 % 24 24 2075
50 % 24 24 2059
40 % 24 24 2049
30 % 24 24 1975

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.