Sequence Similarity Clusters for the Entities in PDB 1QAB

Entity #1 | Chains: A,B,C,D
PROTEIN (transthyretin) protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 13 1450
95 % 289 292 11 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.8
PDBFlex
90 % 289 292 12
70 % 295 298 16
50 % 299 302 21
40 % 299 302 33
30 % 311 314 44
Entity #2 | Chains: E,F
PROTEIN (retinol binding protein) protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43204
95 % 10 10 5234 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 23 23 2281
70 % 24 24 2178
50 % 24 24 2169
40 % 24 24 2158
30 % 24 24 2065

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures