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An Information Portal to 111558 Biological Macromolecular Structures

Structure of the cytochrome b6f (plastohydroquinone : plastocyanin oxidoreductase) from Chlamydomonas reinhardtii
Sequence Clustering and Redundancy Reduction Results
1Q90
Sequence Clusters for the Sequence Entities in PDB 1Q90
Entity #1: Chains: A - Apocytochrome f protein, length: 292 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46312
95% 1 1 33178
90% 1 1 31840
70% 1 1 28534
50% 8 12 3612
40% 8 12 3459
30% 8 12 3212
Entity #2: Chains: B - Cytochrome b6 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49676
95% 1 1 34941
90% 1 1 33424
70% 9 13 3545
50% 9 13 3440
40% 9 13 3295
30% 9 13 3055
Entity #3: Chains: C - Cytochrome B6-F complex iron-sulfur subunit protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 55245
95% 1 1 38098
90% 1 1 36360
70% 2 2 23974
50% 3 3 15186
40% 3 3 13607
30% 3 3 11679
Entity #4: Chains: D - Cytochrome b6-f complex subunit 4 protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52703
95% 1 1 36621
90% 1 1 34955
70% 9 13 3566
50% 9 13 3463
40% 9 13 3320
30% 9 13 3079
Entity #5: Chains: R - Cytochrome B6-F complex iron-sulfur subunit protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60899
95% 1 1 42485
90% 1 1 40571
70% 1 1 36056
50% 1 1 30991
40% 1 1 27366
30% 1 1 23170
Entity #6: Chains: G - Cytochrome b6f complex subunit petG protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 61472
95% 1 1 43000
90% 1 1 41062
70% 1 1 36411
50% 1 1 31287
40% 1 1 27647
30% 1 1 23449
Entity #7: Chains: L - Cytochrome b6f complex subunit petL protein, length: 32 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 61762
95% 1 1 43240
90% 1 1 41280
70% 1 1 36592
50% 1 1 31441
40% 1 1 27797
30% 1 1 23599
Entity #8: Chains: M - Cytochrome b6f complex subunit PETM protein, length: 39 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 61362
95% 1 1 42896
90% 1 1 40962
70% 1 1 36327
50% 1 1 31219
40% 1 1 27583
30% 1 1 23385
Entity #9: Chains: N - Cytochrome b6f complex subunit PETN protein, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 61830
95% 1 1 43299
90% 1 1 41333
70% 1 1 36640
50% 1 1 31485
40% 1 1 27841
30% 1 1 23643
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.