Sequence Similarity Clusters for the Entities in PDB 1Q90

Entity #1 | Chains: A
Apocytochrome f protein, length: 292 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57266
95 % 1 1 40897
90 % 1 1 39060
70 % 1 1 34657
50 % 8 12 4517
40 % 8 12 4295
30 % 8 12 3948
Entity #2 | Chains: B
Cytochrome b6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61397
95 % 1 1 43024
90 % 1 1 40926
70 % 9 13 4445
50 % 9 13 4272
40 % 9 13 4078
30 % 9 13 3762
Entity #3 | Chains: C
Cytochrome B6-F complex iron-sulfur subunit protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67865
95 % 1 1 46678
90 % 1 1 44244
70 % 2 2 29253
50 % 3 3 18533
40 % 3 3 16506
30 % 3 3 14123
Entity #4 | Chains: D
Cytochrome b6-f complex subunit 4 protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64946
95 % 1 1 44974
90 % 1 1 42657
70 % 9 13 4475
50 % 9 13 4299
40 % 9 13 4103
30 % 9 13 3782
Entity #5 | Chains: R
Cytochrome B6-F complex iron-sulfur subunit protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74255
95 % 1 1 51574
90 % 1 1 48912
70 % 1 1 42886
50 % 1 1 36577
40 % 1 1 32192
30 % 1 1 27218
Entity #6 | Chains: G
Cytochrome b6f complex subunit petG protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74903
95 % 1 1 52156
90 % 1 1 49471
70 % 1 1 43302
50 % 1 1 36930
40 % 1 1 32526
30 % 1 1 27550
Entity #7 | Chains: L
Cytochrome b6f complex subunit petL protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75253
95 % 1 1 52437
90 % 1 1 49725
70 % 1 1 43516
50 % 1 1 37111
40 % 1 1 32705
30 % 1 1 27729
Entity #8 | Chains: M
Cytochrome b6f complex subunit PETM protein, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74780
95 % 1 1 52040
90 % 1 1 49359
70 % 1 1 43209
50 % 1 1 36854
40 % 1 1 32455
30 % 1 1 27479
Entity #9 | Chains: N
Cytochrome b6f complex subunit PETN protein, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75330
95 % 1 1 52504
90 % 1 1 49785
70 % 1 1 43569
50 % 1 1 37160
40 % 1 1 32754
30 % 1 1 27778

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures