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An Information Portal to 105906 Biological Macromolecular Structures

Structure of the cytochrome b6f (plastohydroquinone : plastocyanin oxidoreductase) from Chlamydomonas reinhardtii
Sequence Clustering and Redundancy Reduction Results
1Q90
Sequence Clusters for the Sequence Entities in PDB 1Q90
Entity #1: Chains: A - Apocytochrome f protein, length: 292 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43830
95% 1 1 31462
90% 1 1 30242
70% 1 1 27210
50% 8 12 3433
40% 8 12 3302
30% 8 12 3059
Entity #2: Chains: B - Cytochrome b6 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47051
95% 1 1 33158
90% 1 1 31768
70% 9 13 3311
50% 9 13 3269
40% 9 13 3144
30% 9 13 2912
Entity #3: Chains: C - Cytochrome B6-F complex iron-sulfur subunit protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52429
95% 1 1 36229
90% 1 1 34626
70% 2 2 22851
50% 3 3 14454
40% 3 3 12962
30% 3 3 11146
Entity #4: Chains: D - Cytochrome b6-f complex subunit 4 protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49979
95% 1 1 34793
90% 1 1 33253
70% 9 13 3332
50% 9 13 3291
40% 9 13 3168
30% 9 13 2934
Entity #5: Chains: R - Cytochrome B6-F complex iron-sulfur subunit protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57940
95% 1 1 40510
90% 1 1 38737
70% 1 1 34516
50% 1 1 29709
40% 1 1 26239
30% 1 1 22232
Entity #6: Chains: G - Cytochrome b6f complex subunit petG protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58494
95% 1 1 41011
90% 1 1 39212
70% 1 1 34855
50% 1 1 29991
40% 1 1 26506
30% 1 1 22497
Entity #7: Chains: L - Cytochrome b6f complex subunit petL protein, length: 32 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58789
95% 1 1 41256
90% 1 1 39435
70% 1 1 35041
50% 1 1 30149
40% 1 1 26659
30% 1 1 22650
Entity #8: Chains: M - Cytochrome b6f complex subunit PETM protein, length: 39 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58388
95% 1 1 40910
90% 1 1 39116
70% 1 1 34775
50% 1 1 29927
40% 1 1 26446
30% 1 1 22437
Entity #9: Chains: N - Cytochrome b6f complex subunit PETN protein, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58854
95% 1 1 41313
90% 1 1 39486
70% 1 1 35087
50% 1 1 30191
40% 1 1 26701
30% 1 1 22692
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.