Sequence Similarity Clusters for the Entities in PDB 1Q90

Entity #1 | Chains: A
Apocytochrome f protein, length: 292 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54382
95 % 1 1 44694
90 % 1 1 42520
70 % 1 1 39753
50 % 8 12 4708
40 % 8 12 4436
30 % 8 12 4002
Entity #2 | Chains: B
Cytochrome b6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56720
95 % 1 1 47623
90 % 1 1 45237
70 % 9 13 4584
50 % 9 13 4403
40 % 9 13 4155
30 % 9 13 3763
Entity #3 | Chains: C
Cytochrome B6-F complex iron-sulfur subunit protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58191
95 % 1 1 47624
90 % 1 1 45238
70 % 2 2 28450
50 % 3 3 17155
40 % 3 3 15175
30 % 3 3 13445
Entity #4 | Chains: D
Cytochrome b6-f complex subunit 4 protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56718
95 % 1 1 47621
90 % 1 1 45235
70 % 9 13 4583
50 % 9 13 4402
40 % 9 13 4154
30 % 9 13 3762
Entity #5 | Chains: R
Cytochrome B6-F complex iron-sulfur subunit protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56719
95 % 1 1 46490
90 % 1 1 44186
70 % 1 1 38875
50 % 1 1 32983
40 % 1 1 28905
30 % 1 1 24673
Entity #6 | Chains: G
Cytochrome b6f complex subunit petG protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54345
95 % 1 1 44663
90 % 1 1 44181
70 % 1 1 39751
50 % 1 1 33721
40 % 1 1 29556
30 % 1 1 24671
Entity #7 | Chains: L
Cytochrome b6f complex subunit petL protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54352
95 % 1 1 44668
90 % 1 1 42497
70 % 1 1 37473
50 % 1 1 31804
40 % 1 1 29557
30 % 1 1 24672
Entity #8 | Chains: M
Cytochrome b6f complex subunit PETM protein, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58189
95 % 1 1 47619
90 % 1 1 45233
70 % 1 1 39749
50 % 1 1 33720
40 % 1 1 29555
30 % 1 1 24670
Entity #9 | Chains: N
Cytochrome b6f complex subunit PETN protein, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54337
95 % 1 1 47620
90 % 1 1 45234
70 % 1 1 39750
50 % 9 13 4257
40 % 9 13 4024
30 % 9 13 3657

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures