Sequence Similarity Clusters for the Entities in PDB 1Q40

Entity #1 | Chains: A,C
MRNA TRANSPORT REGULATOR Mtr2 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28016
95 % 2 2 23316 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 2 2 22546
70 % 2 2 20584
50 % 2 2 17820
40 % 2 2 15886
30 % 2 2 13579
Entity #2 | Chains: B,D
mRNA export factor MEX67 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40362
95 % 1 1 30883 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 29692
70 % 1 1 26625
50 % 1 1 22720
40 % 1 2 15780
30 % 1 2 13493

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.