Sequence Similarity Clusters for the Entities in PDB 1Q40

Entity #1 | Chains: A,C
MRNA TRANSPORT REGULATOR Mtr2 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29189
95 % 2 2 25499 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 2 2 24620
70 % 2 2 22318
50 % 2 2 19163
40 % 2 2 16920
30 % 2 2 14177
Entity #2 | Chains: B,D
mRNA export factor MEX67 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43071
95 % 1 1 36108 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 34482
70 % 1 1 30672
50 % 1 1 26123
40 % 1 2 16921
30 % 1 2 14178

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures