Sequence Similarity Clusters for the Entities in PDB 1Q40

Entity #1 | Chains: A,C
MRNA TRANSPORT REGULATOR Mtr2 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 27627
95 % 2 2 22998
90 % 2 2 22247
70 % 2 2 20322
50 % 2 2 17605
40 % 2 2 15697
30 % 2 2 13414
Entity #2 | Chains: B,D
mRNA export factor MEX67 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39792
95 % 1 1 30451
90 % 1 1 29279
70 % 1 1 26295
50 % 1 1 22456
40 % 1 2 15589
30 % 1 2 13325

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.