Sequence Similarity Clusters for the Entities in PDB 1Q40

Entity #1 | Chains: A,C
MRNA TRANSPORT REGULATOR Mtr2 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27114
95 % 2 2 22570 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 2 2 21837
70 % 2 2 20013
50 % 2 2 17357
40 % 2 2 15476
30 % 2 2 13230
Entity #2 | Chains: B,D
mRNA export factor MEX67 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39152
95 % 1 1 29971
90 % 1 1 28824
70 % 1 1 25933
50 % 1 1 22183
40 % 1 2 15369
30 % 1 2 13142

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.